EY711310
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHEFN (50S ribosomal protein L3 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplC PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.200e-21 Identity = 65/150 (43.33%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQ--SIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIG 723 IG++G K+GM F GN VTQVKT TDGY A+Q+ + ++TK E GH K G+ R L E RL +G E G ++ +IF + VDV+G + GKGFQGG+KR NFR MTHG S +HR GSIG Sbjct: 3 IGLIGRKVGMTRIFTEDGTSIPVTVIEIA-GNRVTQVKTLETDGYRALQVTTGTKKANRITKAEAGHFAKGGVEAGRGLWEMRLADGEGEGIEVGAEINV-DIFADTVKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLAHRSNGSIG 150 HSP 2 Score: 26.5646 bits (57), Expect = 1.200e-21 Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2 Query: 731 TPXRVYQGKKMPXRMGGTTXRSEKL 805 TP RV++GKKM MG ++ L Sbjct: 154 TPGRVFKGKKMSGHMGAEQVTTQNL 178
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_YERE8 (50S ribosomal protein L3 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 71/167 (42.51%), Postives = 91/167 (54.49%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNG 777 IG++G K+GM F E N VTQVK+ DGY AVQ+ + ++TKPE GH K+G+ R L EFRL F AGQ+++ EIF + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A G Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEI-EANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISV-EIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHLG 166
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIFL (50S ribosomal protein L3 OS=Shigella flexneri GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIF8 (50S ribosomal protein L3 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIDS (50S ribosomal protein L3 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIBS (50S ribosomal protein L3 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIB3 (50S ribosomal protein L3 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ESCF3 (50S ribosomal protein L3 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ENTS8 (50S ribosomal protein L3 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 70/174 (40.23%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY AVQ+ + ++TKPE GH K+G+ R L EFRL + + GQ ++ E+F E VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEEGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEYTVGQSISV-ELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQ 173
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ECOUT (50S ribosomal protein L3 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplC PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21 Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798 IG++G K+GM F E N VTQVK A DGY A+Q+ + ++TKPE GH K+G+ R L EFRL + F GQ ++ E+F + VDV+GT+ GKGF G +KR NFR THG S SHR GSIG + G G++ A + G ++ Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173 The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bpback to top |