EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHEFN (50S ribosomal protein L3 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.200e-21
Identity = 65/150 (43.33%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQ--SIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIG 723
            IG++G K+GM   F                GN VTQVKT  TDGY A+Q+     +  ++TK E GH  K G+   R L E RL     +G E G ++   +IF +   VDV+G + GKGFQGG+KR NFR   MTHG S +HR  GSIG
Sbjct:    3 IGLIGRKVGMTRIFTEDGTSIPVTVIEIA-GNRVTQVKTLETDGYRALQVTTGTKKANRITKAEAGHFAKGGVEAGRGLWEMRLADGEGEGIEVGAEINV-DIFADTVKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLAHRSNGSIG 150          

HSP 2 Score: 26.5646 bits (57), Expect = 1.200e-21
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKL 805
            TP RV++GKKM   MG     ++ L
Sbjct:  154 TPGRVFKGKKMSGHMGAEQVTTQNL 178          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_YERE8 (50S ribosomal protein L3 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 71/167 (42.51%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNG 777
            IG++G K+GM   F               E N VTQVK+   DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL     F AGQ+++  EIF +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A   G
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEI-EANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISV-EIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHLG 166          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIFL (50S ribosomal protein L3 OS=Shigella flexneri GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIF8 (50S ribosomal protein L3 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIDS (50S ribosomal protein L3 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIBS (50S ribosomal protein L3 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SHIB3 (50S ribosomal protein L3 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ESCF3 (50S ribosomal protein L3 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ENTS8 (50S ribosomal protein L3 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 70/174 (40.23%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F E   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEEGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLADGEEYTVGQSISV-ELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQLGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ECOUT (50S ribosomal protein L3 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY A+Q+     +  ++TKPE GH  K+G+   R L EFRL   + F  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SHEFN1.200e-2143.3350S ribosomal protein L3 OS=Shewanella frigidimari... [more]
RL3_YERE81.220e-2142.5150S ribosomal protein L3 OS=Yersinia enterocolitic... [more]
RL3_SHIFL1.220e-2139.6650S ribosomal protein L3 OS=Shigella flexneri GN=r... [more]
RL3_SHIF81.220e-2139.6650S ribosomal protein L3 OS=Shigella flexneri sero... [more]
RL3_SHIDS1.220e-2139.6650S ribosomal protein L3 OS=Shigella dysenteriae s... [more]
RL3_SHIBS1.220e-2139.6650S ribosomal protein L3 OS=Shigella boydii seroty... [more]
RL3_SHIB31.220e-2139.6650S ribosomal protein L3 OS=Shigella boydii seroty... [more]
RL3_ESCF31.220e-2139.6650S ribosomal protein L3 OS=Escherichia fergusonii... [more]
RL3_ENTS81.220e-2140.2350S ribosomal protein L3 OS=Enterobacter sakazakii... [more]
RL3_ECOUT1.220e-2139.6650S ribosomal protein L3 OS=Escherichia coli (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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