EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SALHS (50S ribosomal protein L3 OS=Salmonella heidelberg (strain SL476) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SALG2 (50S ribosomal protein L3 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SALEP (50S ribosomal protein L3 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SALDC (50S ribosomal protein L3 OS=Salmonella dublin (strain CT_02021853) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SALCH (50S ribosomal protein L3 OS=Salmonella choleraesuis GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SALA4 (50S ribosomal protein L3 OS=Salmonella agona (strain SL483) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/174 (39.66%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIR 798
            IG++G K+GM   F               E N VTQVK  A DGY AVQ+     +  ++TKPE GH  K+G+   R L EFRL   + +  GQ ++  E+F +   VDV+GT+ GKGF G +KR NFR    THG S SHR  GSIG   + G    G++ A + G     ++
Sbjct:    2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQ 173          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_DESVM (50S ribosomal protein L3 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 60/148 (40.54%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIG 723
            +G++G K+GM   F                  ++ QV+   TDGYDAVQI +   ++K +TKP  GH  K+G    R+L+E RL++   FE GQ+L    +F  G+ V V+GT+IGKG+QG ++R NF     THG  K HR  GSIG
Sbjct:    5 LGILGRKVGMTRIFASDGSAVAVTVIQAGPCPVI-QVRNGETDGYDAVQIAFEEAKEKHVTKPARGHFAKAGKGLFRNLREIRLEAPAEFEVGQELTV-SLFAAGEKVKVTGTSIGKGYQGVMRRWNFAGSKDTHGCEKVHRSGGSIG 150          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ALTMD (50S ribosomal protein L3 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rplC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.080e-21
Identity = 69/169 (40.83%), Postives = 93/169 (55.03%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGAEHS-GPCIPGEEDAXKNG 777
            IG++G K+GM   F                 N VTQ++TE +DGY A+Q+     +  ++ K E GH  K+G+   R L EFRL+  +G   E G ++  E IFN+   +DV+GT+ GKGFQG IKR NF    MTHG S SHR  GSIG   S G    G++ A + G
Sbjct:    3 IGLVGRKVGMTRIFTEDGTSIPVTVIEATP-NRVTQLRTEESDGYRALQVTAGTKKANRINKAEAGHFAKAGVEAGRTLVEFRLEENEGADIEVGSEITVE-IFNDTKKIDVTGTSKGKGFQGAIKRWNFSSQRMTHGNSLSHRAPGSIGQNQSPGKVFKGKKMAGQLG 169          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_HERAR (50S ribosomal protein L3 OS=Herminiimonas arsenicoxydans GN=rplC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.637e-21
Identity = 65/170 (38.24%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  259 VSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFE--AGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIG-AEHSGPCIPGE 756
            ++ + + G G++G K+GMM  F                 N VTQ+KT   DGY AVQ+ +   R  ++ K   GH  K+G+     L+EFR+ +    E   G  +A   +F  G  VDV G TIGKG+ G IKRH+F  G  THG S+SH   GSIG A+  G   PG+
Sbjct:    1 MNQNQDKGQGLLGRKVGMMRIFTDDGDSIPVTVLDV-SNNRVTQIKTPDVDGYSAVQVAFGSRRASRVNKASAGHHAKAGVEAGTVLKEFRVAATAASELKVGDVIA-ASLFEVGQKVDVQGVTIGKGYAGTIKRHHFASGRATHGNSRSHNVPGSIGMAQDPGRVFPGK 168          

HSP 2 Score: 23.8682 bits (50), Expect = 2.637e-21
Identity = 11/40 (27.50%), Postives = 19/40 (47.50%), Query Frame = 2
Query:  734 PXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            P RV+ GK+M   +G      + L     + D   +++KG
Sbjct:  161 PGRVFPGKRMTGHLGDVARTMQNLEIARIDADRQLLLVKG 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_RALSO (50S ribosomal protein L3 OS=Ralstonia solanacearum GN=rplC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.639e-21
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFE-EIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIG-AEHSGPCIPGE 756
            +G++G K+GM   F                GN VTQ+KT+ TDGY AVQ+ +   R  ++TKP  GHL K+G+     + EFR+ +    E       + ++F+    +DV GTTIGKG+ G IKR++F  G  +HG S+SH   GSIG A+  G   PG+
Sbjct:    3 LGLVGRKVGMTRVFTDDGDSIPVTVLEVG-GNRVTQIKTDETDGYTAVQVTFGTRRASRVTKPLAGHLAKAGVEAGEIIVEFRIDATKAAELKLGDTIDVDLFSVDQKIDVQGTTIGKGYAGTIKRYHFSSGRASHGNSRSHNVPGSIGMAQDPGRVFPGK 162          

HSP 2 Score: 23.8682 bits (50), Expect = 2.639e-21
Identity = 10/24 (41.67%), Postives = 13/24 (54.17%), Query Frame = 2
Query:  734 PXRVYQGKKMPXRMGGTTXRSEKL 805
            P RV+ GK+M   MG  T   + L
Sbjct:  155 PGRVFPGKRMTGHMGDVTRTVQNL 178          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SALHS2.080e-2139.6650S ribosomal protein L3 OS=Salmonella heidelberg ... [more]
RL3_SALG22.080e-2139.6650S ribosomal protein L3 OS=Salmonella gallinarum ... [more]
RL3_SALEP2.080e-2139.6650S ribosomal protein L3 OS=Salmonella enteritidis... [more]
RL3_SALDC2.080e-2139.6650S ribosomal protein L3 OS=Salmonella dublin (str... [more]
RL3_SALCH2.080e-2139.6650S ribosomal protein L3 OS=Salmonella choleraesui... [more]
RL3_SALA42.080e-2139.6650S ribosomal protein L3 OS=Salmonella agona (stra... [more]
RL3_DESVM2.080e-2140.5450S ribosomal protein L3 OS=Desulfovibrio vulgaris... [more]
RL3_ALTMD2.080e-2140.8350S ribosomal protein L3 OS=Alteromonas macleodii ... [more]
RL3_HERAR2.637e-2138.2450S ribosomal protein L3 OS=Herminiimonas arsenico... [more]
RL3_RALSO2.639e-2138.5150S ribosomal protein L3 OS=Ralstonia solanacearum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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