EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_STAHJ (50S ribosomal protein L3 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.929e-28
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVR--------DKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F               + N+V Q KTE  DGY+A+Q+G+   +        +K   KP  GH +K+G  P R ++EFR  ++D +E GQ++  +  F  GD++DV+GT+ GKGFQG IKRH    G M HGS  HR  GS+G
Sbjct:    4 GILGRKIGMTQVFGENGELIPVTVVEASQ-NVVLQKKTEEVDGYNAIQVGFEDKKAYKKDAKSNKYANKPAEGHAKKAGAAPKRFIREFRNVNVDEYEVGQEVTVDT-FEAGDIIDVTGTSKGKGFQGAIKRHGQARGPMAHGSHFHRAPGSVG 155          

HSP 2 Score: 31.5722 bits (70), Expect = 7.929e-28
Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = 2
Query:  740 RVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            RV++G+KMP RMGG T   + L     + + + +++KG
Sbjct:  162 RVFKGQKMPGRMGGNTVTVQNLEVVQVDTENNVILVKG 199          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ENTFA (50S ribosomal protein L3 OS=Enterococcus faecalis GN=rplC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.938e-28
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F                 N+V QVKT  TDGY+A+Q+GY+  R+    KP  GH+ K+   P R ++EF+   +  +E G+++  + +F  GD+VDV+GTT GKGFQG IKRH    G M+HGS+ HR+ GS+G
Sbjct:    4 GILGKKVGMTQIFTESGELIPVTVVEATP-NVVLQVKTVETDGYEAIQVGYQDKREVLSNKPAKGHVAKANTAPKRFIKEFKNVELGEYEVGKEIKVD-VFQAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMG 147          

HSP 2 Score: 26.5646 bits (57), Expect = 7.938e-28
Identity = 14/49 (28.57%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            ++GP+    P RV++ K++  RMGG     + L     + + + ++IKG
Sbjct:  145 SMGPVA---PNRVFKNKRLAGRMGGDRVTIQNLEVVKVDVERNVILIKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BACSU (50S ribosomal protein L3 OS=Bacillus subtilis GN=rplC PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 7.938e-28
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F                 N+V Q KT   DGY+A+Q+G+   R+K   KPE GH+ K+   P R ++E R   +D +E GQ++  E IF+ G++VDV+G + GKGFQG IKRH    G M+HGS+ HR+ GS+G
Sbjct:    4 GILGRKIGMTQVFAENGDLIPVTVIEAAP-NVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVE-IFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMG 147          

HSP 2 Score: 29.261 bits (64), Expect = 7.938e-28
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            ++GP+    P RV++GK +P RMGG     + L     + + + ++IKG
Sbjct:  145 SMGPV---DPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PELPD (50S ribosomal protein L3 OS=Pelobacter propionicus (strain DSM 2379) GN=rplC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 7.938e-28
Identity = 66/148 (44.59%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGN-IVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGA 726
            G++G K+GM   F              + G  +VTQ KT + DGY AVQ+G+        +KP LGH  KSG    R+L+EF+  +      G  L  E+ F  GD VDV+GT+IGKGFQG IKR+NFR G  +HGS+ HR  GSIGA
Sbjct:    4 GIIGKKIGMTQIFTEDGTRVPVTV--IQAGPCVVTQKKTASIDGYSAVQVGFDSTPAANASKPMLGHCTKSGQGVFRYLREFKFDAASEMNLGDVLTVEQ-FTAGDFVDVTGTSIGKGFQGVIKRYNFRGGRASHGSRFHRAPGSIGA 148          

HSP 2 Score: 30.0314 bits (66), Expect = 7.938e-28
Identity = 15/41 (36.59%), Postives = 25/41 (60.98%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            TP RV++ KKMP ++G T    + L+    + D + ++IKG
Sbjct:  151 TPSRVFKNKKMPGQLGNTQVTMQCLQVIRVDADDNLLLIKG 191          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROM2 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplC PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.720e-28
Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKPENL 876
            IG++G KLGM   F+                  VTQ+KT A DGY A+QIGY   ++K ++KPE GHL KSG   ++HL+E+R++    +E G ++  +  F  G  VD+SG ++G+GF G  KRH F  G M+HGSK+HR  GS GA  + G   PG+  A + G      +   + K+     L   K +VPGKP ++
Sbjct:    3 IGILGKKLGMSQLFDDKGNAVPVTLIEAGPCR-VTQLKTNALDGYTAIQIGYGVSKEKHISKPEKGHLLKSGEELLKHLKEYRVEETSSYEIGNQITVKN-FEVGQKVDISGKSMGRGFSGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVVKGSVPGKPGSI 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_CHLSY (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.033e-27
Identity = 66/148 (44.59%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGA 726
            G++G K+GMM YF                  IVTQ++T   DGY AVQ+GY  V  +KLTKP+ GHL+ SG   +R+L+EF          G+ +   E+F  G  VD+SGT+ G+GF G +KRH FR G  THG S  HR  GSIGA
Sbjct:    4 GLLGRKIGMMQYFTAQGMAIPVTVIAAGPC-IVTQIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTV-ELFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGA 149          

HSP 2 Score: 28.8758 bits (63), Expect = 1.033e-27
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKL 805
            TP RV++G++M  RMGGT    + L
Sbjct:  152 TPGRVWKGQRMAGRMGGTRVTIQNL 176          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_CHLAA (50S ribosomal protein L3 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.033e-27
Identity = 66/148 (44.59%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHG-SKSHRQFGSIGA 726
            G++G K+GMM YF                  IVTQ++T   DGY AVQ+GY  V  +KLTKP+ GHL+ SG   +R+L+EF          G+ +   E+F  G  VD+SGT+ G+GF G +KRH FR G  THG S  HR  GSIGA
Sbjct:    4 GLLGRKIGMMQYFTAQGMAIPVTVIAAGPC-IVTQIRTPERDGYSAVQLGYEEVEPRKLTKPQQGHLKASGGKMLRYLREFSADDPQAHTPGEVVTV-ELFRPGQKVDISGTSKGRGFAGVVKRHGFRGGPKTHGQSDRHRAPGSIGA 149          

HSP 2 Score: 28.8758 bits (63), Expect = 1.033e-27
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKL 805
            TP RV++G++M  RMGGT    + L
Sbjct:  152 TPGRVWKGQRMAGRMGGTRVTIQNL 176          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BACA2 (50S ribosomal protein L3 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.033e-27
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F                 N+V Q KT   DGY+A+Q+G+   R+K   KPE GH+ K+   P R ++E R   +D +E GQ++  E IF+ G++VDV+G + GKGFQG IKRH    G M+HGS+ HR+ GS+G
Sbjct:    4 GILGRKIGMTQVFAENGDLIPVTVIEAAP-NVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVDMDAYEIGQEVKVE-IFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMG 147          

HSP 2 Score: 29.261 bits (64), Expect = 1.033e-27
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            ++GP+    P RV++GK +P RMGG     + L     + + + ++IKG
Sbjct:  145 SMGPV---DPNRVFKGKLLPGRMGGDQITVQNLEIVKVDAERNLLLIKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROM9 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.139e-27
Identity = 78/200 (39.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKPENL 876
            IG++G KLGM   F+                  VTQ+KT   DGY AVQIGY   +DK + KPE GHL KSG   ++HL+E+R++    +E G ++  +  F  G  VD+SG ++G+GF G  KRH F  G M+HGSK+HR  GS GA  + G   PG+  A + G      +   + K+     L   K +VPGKP ++
Sbjct:    3 IGILGKKLGMSQLFDDKGNAVPVTLIEAGPCR-VTQLKTTTLDGYSAVQIGYGLSKDKHINKPEKGHLLKSGEELLKHLKEYRVEETTSYEIGNQITVKN-FEVGQKVDISGKSMGRGFAGYQKRHGFSRGPMSHGSKNHRAPGSTGAGTTPGRIYPGKRMAGRYGGKQITTKGLLVLKIDDQKNLLVIKGSVPGKPGSI 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_NOCSJ (50S ribosomal protein L3 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.343e-27
Identity = 64/148 (43.24%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726
            G++GTKLGM   ++                N+VTQV+T ATDGY+A+Q+GY  +  +K+TKP+ GH  K+G  P RHL E R      +  GQ+LA  + F  G+ +DV+GT+ GKGF G +KRH F   + +HG+ ++HR+ GSIGA
Sbjct:    9 GLLGTKLGMTQVWDENNRVVPVTVIAAGT-NVVTQVRTPATDGYNAIQVGYGEIDGRKVTKPQAGHFGKAGTTPRRHLVEIRTALAADYTVGQELAV-DTFAAGEEIDVTGTSKGKGFAGTMKRHGFAGVSASHGAHRNHRKPGSIGA 154          

HSP 2 Score: 25.0238 bits (53), Expect = 1.343e-27
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKL 805
            TP RV++G +M  RMG  T  ++ +
Sbjct:  157 TPGRVFKGVRMAGRMGTDTVTTQNV 181          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_STAHJ7.929e-2839.6150S ribosomal protein L3 OS=Staphylococcus haemoly... [more]
RL3_ENTFA7.938e-2841.7850S ribosomal protein L3 OS=Enterococcus faecalis ... [more]
RL3_BACSU7.938e-2841.7850S ribosomal protein L3 OS=Bacillus subtilis GN=r... [more]
RL3_PELPD7.938e-2844.5950S ribosomal protein L3 OS=Pelobacter propionicus... [more]
RL3_PROM28.720e-2838.5050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_CHLSY1.033e-2744.5950S ribosomal protein L3 OS=Chloroflexus aurantiac... [more]
RL3_CHLAA1.033e-2744.5950S ribosomal protein L3 OS=Chloroflexus aurantiac... [more]
RL3_BACA21.033e-2741.7850S ribosomal protein L3 OS=Bacillus amyloliquefac... [more]
RL3_PROM91.139e-2739.0050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_NOCSJ1.343e-2743.2450S ribosomal protein L3 OS=Nocardioides sp. (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
back to top