EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PETMO (50S ribosomal protein L3 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.345e-27
Identity = 61/147 (41.50%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGN-IVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F+             + G  +V Q KT  TDGY+A+QIG+  + ++K  KP +GH +K+ + P+R+L+EFR++++D +E GQK+    IF+EG+ +D+ G + G+G+ G +KR NFR G  THGSK HR  GS G
Sbjct:    3 GILGKKVGMTRVFKDDKAIPVTV---IKAGPCVVVQKKTVETDGYNAIQIGFEEIPERKANKPLMGHFKKAQVKPLRYLREFRVENVDDYEIGQKIDV-TIFSEGEKIDLIGNSKGRGYSGVMKRWNFRGGENTHGSKFHRGLGSTG 145          

HSP 2 Score: 23.483 bits (49), Expect = 1.345e-27
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  734 PXRVYQGKKMPXRMG 778
            P +V++GKKMP + G
Sbjct:  150 PSKVFKGKKMPGQYG 164          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_GEOTN (50S ribosomal protein L3 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.345e-27
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGA 726
            G++G K+GM   F                 N+V Q KT   DGY+A+Q+G+  +  K+  KP++GH  K+   P R ++E R  +++ +E GQ++  + IF+EGD+VDV+G + GKGFQG IKRH    G M HGS+ HR+ GS+GA
Sbjct:    4 GILGRKIGMTQVFAENGDLIPVTVIEATP-NVVLQKKTIENDGYEAIQLGFEDLSTKRANKPQIGHAAKANTAPKRFIREIRGANVNEYEVGQEVKVD-IFSEGDIVDVTGISKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGA 148          

HSP 2 Score: 26.9498 bits (58), Expect = 1.345e-27
Identity = 13/40 (32.50%), Postives = 23/40 (57.50%), Query Frame = 2
Query:  734 PXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            P RV++ K +P RMGG     + L+    + + + ++IKG
Sbjct:  151 PNRVFKTKNLPGRMGGERVTIQNLKIVKVDPERNLLLIKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BACHD (50S ribosomal protein L3 OS=Bacillus halodurans GN=rplC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.345e-27
Identity = 62/146 (42.47%), Postives = 86/146 (58.90%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F                 N+V Q KT  +DGY+AVQ+G+   +     KPE GH  K+   P R ++E R  ++D FE GQ++  +  F EGD+VDV+GT+ GKGF G IKRHN   G M+HGS+ HR+ GS+G
Sbjct:    4 GILGKKVGMTQVFAENGDVIPVTVIEAAP-NVVLQKKTVDSDGYEAVQLGFDDQKQNNANKPEKGHAAKAETAPKRFIKEIRGVNLDEFEVGQEIKVDA-FAEGDIVDVTGTSKGKGFAGAIKRHNQARGPMSHGSRYHRRPGSMG 147          

HSP 2 Score: 28.8758 bits (63), Expect = 1.345e-27
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLR-CKNCNDXSCVMIKG 850
            ++GP+    P RV++GK +P RMGG     + L   K   + + +++KG
Sbjct:  145 SMGPV---DPNRVFKGKALPGRMGGEQVTVQNLEIIKVDAERNLLLVKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_DESHY (50S ribosomal protein L3 OS=Desulfitobacterium hafniense (strain Y51) GN=rplC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.487e-27
Identity = 73/204 (35.78%), Postives = 111/204 (54.41%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAE-----HSGPCIPGEEDAXKNGRXNXKIRKAQM*KL**PFLCNDKRAVPGKPENLCV 882
            G++G K+GM   F                  ++ Q KT+ATDGY+A+Q+G+  +R++   KP+ GH+ K+ + PMR+++EFR+  ++ +E GQ +   E+F  GD VDV G + GKGF G IKRH    G M HGSK HR+ GS+GA+       G  +PG     +    N K+ +    K     +   K AVPG  ++L +
Sbjct:    7 GILGKKVGMTQVFTEEGHLIPVTVVEAGPCYVI-QKKTKATDGYNAIQVGFGALRERLANKPQKGHVAKASVKPMRYIREFRVDDVEAYEIGQVIT-AELFAAGDAVDVVGISKGKGFAGMIKRHGASRGPMKHGSKYHRRTGSLGAKGPARVFKGRNLPGRMGGERVTVQNLKVVRVDADK----NMILVKGAVPGAKKSLLI 204          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BREBN (50S ribosomal protein L3 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.487e-27
Identity = 77/200 (38.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHSGPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENLCV 882
            G++G KLGM   F                 N+V Q K   TDGY+A+QIG+   ++++  KPE GH  K+   P R ++E R  ++  +E GQ+L   +IF EG++VDV+G + GKGFQG IKRHN   G M HGS+ HR  GS+GA        G+    + G  N  I+  ++ K+     L   K +VPG P+N CV
Sbjct:    4 GILGKKLGMTQVFGPNGTATAVTVIEVGS-NVVLQKKDVETDGYEAIQIGFEDKKEQRANKPEKGHAAKANTAPKRFIREIRGVNLADYEVGQELK-ADIFAEGEMVDVAGVSKGKGFQGAIKRHNQSRGPMAHGSRYHRGPGSMGAVAPNRVFKGQTLPGQMGGDNVTIQNLEVIKVDTERNLVLVKGSVPG-PKNSCV 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_NOCFA (50S ribosomal protein L3 OS=Nocardia farcinica GN=rplC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.277e-27
Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREG-NIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKS-HRQFGSIG 723
            G++GTKLGM   F+             + G N+VTQ++TE  DGY AVQ+ +  +  +K+ KP  G   K+G+ P RH+ E R+     FE GQ++   ++F EG  VDV+GT+ GKG+ G +KRH FR    +HG+++ HR+ GSIG
Sbjct:   11 GILGTKLGMTQVFDEKNRVVPVTV--IKAGPNVVTQIRTEERDGYSAVQVAFGAIDPRKVNKPVAGQFAKAGVTPRRHIAEIRVADASSFEVGQEIN-ADVFEEGSYVDVTGTSKGKGYAGTMKRHGFRGQGASHGAQAVHRRPGSIG 155          

HSP 2 Score: 26.1794 bits (56), Expect = 2.277e-27
Identity = 13/41 (31.71%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            TP RV++G +M  RMG     ++ L     + +   ++IKG
Sbjct:  159 TPGRVFKGMRMAGRMGNDRVTTQNLSVHKVDAENGLLLIKG 199          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_STAS1 (50S ribosomal protein L3 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.278e-27
Identity = 60/154 (38.96%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVR--------DKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F               + N++ Q K+E  DGY+A+Q+GY   +         K   KP  GH +K+G  P R ++EFR  ++D +E GQ+++    F  GD++DV+G + GKGFQG IKRHN   G M+HGS  HR  GS+G
Sbjct:    4 GILGRKIGMTQVFGENGDLIPVTVVEASQ-NVILQKKSEEIDGYNAIQVGYEDKQAYKKDSRSSKYANKPAEGHAKKAGTAPKRFIREFRNVNVDEYEVGQEVSVNT-FEAGDVIDVTGVSKGKGFQGAIKRHNQARGPMSHGSHFHRAPGSVG 155          

HSP 2 Score: 31.5722 bits (70), Expect = 2.278e-27
Identity = 14/38 (36.84%), Postives = 24/38 (63.16%), Query Frame = 2
Query:  740 RVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            RV++G+KMP RMGG T   + L     + + + +++KG
Sbjct:  162 RVFKGQKMPGRMGGNTVTVQNLEVVQIDAENNVILVKG 199          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ARTS2 (50S ribosomal protein L3 OS=Arthrobacter sp. (strain FB24) GN=rplC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.278e-27
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIG 723
            G++GTKLGM   ++              + N++TQ++    DGY AVQIGY ++  +K+TKP  GH +K+G+ P RH+ E R      +E GQ+L+  E+F  G  +DV GTT GKGF G +KRH F     +HG+ K+HR+ GSIG
Sbjct:    9 GLLGTKLGMTQVWDENNKLIPVTVVQ-ADSNVITQLRNADVDGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAAEYELGQELSV-EVFEAGQKIDVVGTTKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIG 153          

HSP 2 Score: 26.9498 bits (58), Expect = 2.278e-27
Identity = 15/42 (35.71%), Postives = 23/42 (54.76%), Query Frame = 2
Query:  728 NTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            +TP RV++G KM  RMG     +  L     + + S ++IKG
Sbjct:  156 STPSRVFKGMKMAGRMGAVRHTTLNLTVHAVDVEKSLLLIKG 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_LISW6 (50S ribosomal protein L3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.280e-27
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F               + N+V Q KT  TDGY+AVQIG+   R K   KPE GH+ K+   P R ++EFR  ++D +E G ++   ++F EGD++D +G + GKGFQG IKRH    G M HGS+ HR+ GS+G
Sbjct:    4 GILGRKVGMTQVFTENGELIPVTVIEAAQ-NVVLQKKTVETDGYEAVQIGFEDKRAKLSNKPEQGHVAKADTTPKRFIREFRDVNLDEYEIGAEVKV-DVFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMG 147          

HSP 2 Score: 26.9498 bits (58), Expect = 2.280e-27
Identity = 14/49 (28.57%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            ++GP+    P RV++ K +P RMGG     + L     + + + +++KG
Sbjct:  145 SMGPVA---PNRVFKNKLLPGRMGGEQITIQNLEIVKVDVEKNVLLVKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_LISIN (50S ribosomal protein L3 OS=Listeria innocua GN=rplC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.280e-27
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F               + N+V Q KT  TDGY+AVQIG+   R K   KPE GH+ K+   P R ++EFR  ++D +E G ++   ++F EGD++D +G + GKGFQG IKRH    G M HGS+ HR+ GS+G
Sbjct:    4 GILGRKVGMTQVFTENGELIPVTVIEAAQ-NVVLQKKTVETDGYEAVQIGFEDKRAKLSNKPEQGHVAKADTTPKRFIREFRDVNLDEYEIGAEVKV-DVFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMG 147          

HSP 2 Score: 26.9498 bits (58), Expect = 2.280e-27
Identity = 14/49 (28.57%), Postives = 27/49 (55.10%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            ++GP+    P RV++ K +P RMGG     + L     + + + +++KG
Sbjct:  145 SMGPVA---PNRVFKNKLLPGRMGGEQITIQNLEIVKVDVEKNVLLVKG 190          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_PETMO1.345e-2741.5050S ribosomal protein L3 OS=Petrotoga mobilis (str... [more]
RL3_GEOTN1.345e-2740.8250S ribosomal protein L3 OS=Geobacillus thermodeni... [more]
RL3_BACHD1.345e-2742.4750S ribosomal protein L3 OS=Bacillus halodurans GN... [more]
RL3_DESHY1.487e-2735.7850S ribosomal protein L3 OS=Desulfitobacterium haf... [more]
RL3_BREBN1.487e-2738.5050S ribosomal protein L3 OS=Brevibacillus brevis (... [more]
RL3_NOCFA2.277e-2741.2250S ribosomal protein L3 OS=Nocardia farcinica GN=... [more]
RL3_STAS12.278e-2738.9650S ribosomal protein L3 OS=Staphylococcus saproph... [more]
RL3_ARTS22.278e-2742.1850S ribosomal protein L3 OS=Arthrobacter sp. (stra... [more]
RL3_LISW62.280e-2742.4750S ribosomal protein L3 OS=Listeria welshimeri se... [more]
RL3_LISIN2.280e-2742.4750S ribosomal protein L3 OS=Listeria innocua GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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