EY711306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.320e-15 Identity = 63/221 (28.51%), Postives = 98/221 (44.34%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-----FGFVRYSTHPEASLAIQMGN 651 DA+ A+ LN +F +PI++ + SG N+F+ +L + + LF FS F T +V D TGRS+G+GFV F +E AQ+AI+ LNG + ++Q+ + +E+ P P++T VYV NL E+ +L + F G I V RD+ FGFV + A+ A++ N Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV-------------------------FVGHFIRRQERARDENTP--TPRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15 Identity = 70/232 (30.17%), Postives = 101/232 (43.53%), Query Frame = 1 Query: 1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKG-----FGFVRYSTHPEASLAIQMGNARILCGK 672 ADA A+ T+N + GQPI++ W SQR+ SG N+F+ +L + + L+ FS F +V D+ SRGFGFV F E AQ AIN +NG L +R++ S E+++ +E TN +YV NL +V L F G + V+V RD FGFV + H EA A+ N + + G+ Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV----FVGHFKSRREREAELGARALEFTN-----------------------IYVKNLPVDVDEQGLQDLFSQF--GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259 HSP 2 Score: 73.9442 bits (180), Expect = 1.366e-12 Identity = 69/231 (29.87%), Postives = 103/231 (44.59%), Query Frame = 1 Query: 7 AWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ--RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 A AI T+NG + + + V + +RE G N++V +L +V + L FS F +VM D +G SR FGFV+F E+AQ A+ +NGK + R + A K E+Q+ EL + Q++ Q +YV NL + L + F V T V + KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 151 AQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRV----ERQN-------ELKRRFEQMKQDRL------RRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.553e-15 Identity = 70/230 (30.43%), Postives = 104/230 (45.22%), Query Frame = 1 Query: 16 AIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 AI +NG + + + V + +RE G NV++ + ++ D L F + +VM D G+SRGFGFVSF EDAQ A++D+NGK L + I A K E+Q+ EL + Q++ Q +YV NL + L + F G+I +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEFTPF--GSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363 HSP 2 Score: 77.411 bits (189), Expect = 1.236e-13 Identity = 68/230 (29.57%), Postives = 107/230 (46.52%), Query Frame = 1 Query: 1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTN-GISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 ADA A+ T+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F +V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ S E+++ E TN I G++ +E E QY LS +V + D H + +GFGFV + H +A A+ N + L GK I Sbjct: 63 ADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV----FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAA----LSVKVMTDD-----HG------------KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.558e-15 Identity = 68/233 (29.18%), Postives = 106/233 (45.49%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 D AI LN I G+P ++ W SQR+ + SG N+F+ +L P + + L FS F +V D G+S+ FGFV + E A++AI ++NG L +R+ V + IS+ +E E+ N +T +YV N+ E + DL + F G I + +++D KGFGFV Y H A A++ N + + G+ I Sbjct: 105 DGEKAIEELNYSPIEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDM-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDRE------------------------VFVGKHISKKDRESKFEEIKAN---FTNIYVKNIDLEYSEEDLKKLFTP--YGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKI 303 HSP 2 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 61/234 (26.07%), Postives = 101/234 (43.16%), Query Frame = 1 Query: 7 AWAAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 A AAI +NG + + + V + RE + N++V ++ E ++ L F+ + + + D + G+S+GFGFV++ E A A+ +LN K + ++I A K +E + + +E + Q +++ NL + S L F GTI RV D KGFGFV +S+ EA+ AI N R+ GKP+ Sbjct: 193 AEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKL-----------------SKYQGVNLFIKNLDDTIDSEKLEEEFKPF--GTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPL 406
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14 Identity = 50/153 (32.68%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISE-DGQEKSNEDAP 456 DA AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S ++ ++ N +S+ D + DAP Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14 Identity = 50/153 (32.68%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISE-DGQEKSNEDAP 456 DA AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S ++ ++ N +S+ D + DAP Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14 Identity = 50/153 (32.68%), Postives = 87/153 (56.86%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISE-DGQEKSNEDAP 456 DA AI +N ++G+PI+VN A A ++ D N+F+G+L PE+ + L+ FS F ++M D TG S+G+ F++F + + + +AI +NG++L NR I ++A K + G E+ S ++ ++ N +S+ D + DAP Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG-ERHGSAAERLLAAQNPLSQADRPHQLFADAP 215
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14 Identity = 51/172 (29.65%), Postives = 88/172 (51.16%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDA-RVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTS 516 DA AI LN ++G+PIKVN A A + D N+FVG+L PEV + L+ FS F ++M D +G S+GF F++F + E + +A+ +NG++L NR I ++A K + G+ ++ + + +D + D P P T + + + + + + Sbjct: 66 DADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAA 235
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14 Identity = 68/230 (29.57%), Postives = 105/230 (45.65%), Query Frame = 1 Query: 16 AIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 AI +NG + + + V + +RE G NV++ + ++ D L F + +VM D G+S+GFGFVSF EDAQ A++++NGK + + + A K E+Q+ EL + Q++ Q +YV NL + L + F L GTI +V R KGFGFV +S+ EA+ A+ N RI+ KP+ Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKV----ERQT-------ELKRKFEQMKQDRI------TRYQGVNLYVKNLDDGIDDERLRKEF--LPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363 HSP 2 Score: 77.0258 bits (188), Expect = 1.614e-13 Identity = 64/231 (27.71%), Postives = 104/231 (45.02%), Query Frame = 1 Query: 1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF----HALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGK 672 ADA A+ T+N I G+P+++ W SQR+ + SG N+F+ +L + + L+ FS F +V+ D+ S+G+GFV F QE A+ AI+ +NG L +R++ G + +E+ E ++T VY+ N ++ L F AL V + D + KGFGFV + H +A A+ N + + GK Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--------------------------GRFKSRKEREAE-LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.460e-14 Identity = 65/233 (27.90%), Postives = 102/233 (43.78%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 D AI LN + G+P ++ W SQR+ + SG N+F+ +L P + + L FS F +V D G+S+ FGFV + +E AQ+AI +NG L +R++ G D +S +E E YT +YV N+ T + F G I + +++D KGFGFV + H A+ A++ N + + G+ I Sbjct: 120 DGEKAIEELNYTPVEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV---------GKHVSKKDRESKLE------------------EMKANYTNIYVKNIDLAYTEKEFEELFAPF--GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKI 318 HSP 2 Score: 70.8626 bits (172), Expect = 1.157e-11 Identity = 64/235 (27.23%), Postives = 106/235 (45.11%), Query Frame = 1 Query: 7 AWAAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE-KQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 A AAI ++NG + + + V + RE + + N++V ++ T+ F+ F + + D + G+S+GFGFV+F E A A+ +LN K + ++I A K +E K+ ++ + +L + Q ++V NL ++ S L F GTI +V D KGFGFV +ST EA+ AI N R++ GKP+ Sbjct: 208 AQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKL------------------SKYQGVNLFVKNLDEQIDSEKLEEEFKPF--GTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPL 421 The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bpback to top |