EY711306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12 Identity = 63/218 (28.90%), Postives = 99/218 (45.41%), Query Frame = 1 Query: 94 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT----TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWGSKPTPPGT 717 +D++ VFVG LS V D L F + T ARV+ D ++GRS+G+G+V F E A++A+ AA G D + + ++L+N + Q + + A Q + TV+VGNLS T DL F G I+ +R+ D KGFG+V +S A ++M N + G+P + + + T G+ Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV-----------------AANGTKEIDGRMVN-----LDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGG--CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM-NGHFIAGRPCRLDFSTPRTGGGS 449
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12 Identity = 68/231 (29.44%), Postives = 102/231 (44.16%), Query Frame = 1 Query: 16 AIVTLNGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-----DKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 AI LNG + GQ I V + SQ E+T H+ N++V +++ E TD F+ F A + D G+ +GFGFV++ EDA A+ LN L ++ G ++ ++ V++ Q ++ Q ++V NL V L F GTI +V R KGFGFV +ST EA+ AI N +I+ GKP+ Sbjct: 182 AIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV---------GRAQKKNERMHVLK--------KQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAP--YGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12 Identity = 63/233 (27.04%), Postives = 103/233 (44.21%), Query Frame = 1 Query: 4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 D AI LN I G+P ++ W SQR+ + +G N+F+ +L P + + L F+ F +V D G S+ FGFV + E A++AI ++NG L +R+ V + IS+ +E E+ N +T VY N+ + + + + F A G I + +++D KGFGFV + H A A+ N + + G+ I Sbjct: 104 DGEKAIEDLNYSLIEGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDM-GISKCFGFVHYETAEAAEAAIENVNGMLLNDRE------------------------VYVGKHISKKDRESKFEEMKAN---FTNVYAKNIDLDFSEEEFKKLFEA--YGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKI 302 HSP 2 Score: 68.1662 bits (165), Expect = 7.497e-11 Identity = 60/234 (25.64%), Postives = 101/234 (43.16%), Query Frame = 1 Query: 7 AWAAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 A AAI +NG + + + V + RE + NV+ ++ + ++ F + + + D + G+S+GFGFV+F N E A A+++LN K + ++I A K +E + + +E + Q +++ NL + S L F G+I RV D KGFGFV +S+ EA+ AI N R++ GKP+ Sbjct: 192 AEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKL-----------------SKYQGVNLFIKNLDDTIDSEKLEEEFKPF--GSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPL 405
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.975e-12 Identity = 57/214 (26.64%), Postives = 96/214 (44.86%), Query Frame = 1 Query: 16 AIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAI 639 AI LN I G+P ++ W+ S R+ SG N+++ +L P + + +L FS F +V D+ G SRGFGFV F N+ DA+ AI ++G + ++++ + A + D + + E ++T VYV N+ E + + F G I +++D +GFGFV + H A+ A+ Sbjct: 95 AIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDEN-GVSRGFGFVHFENESDARDAIEAVDGMLMNDQEV---YVALHVSKKDRQSKLE------------------------EVKAKFTNVYVKNIDQETSQEEFEELFGK--YGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAV 276
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ W + +KQ K Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ W + +KQ K Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ W + +KQ K Sbjct: 381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 476
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ W + +KQ K Sbjct: 349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 444
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 64/234 (27.35%), Postives = 97/234 (41.45%), Query Frame = 1 Query: 1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 ADA A+ TLN I G+ ++ W SQR+ + SG NVF+ +L + L+ FS F +V+ D S+GFGFV + QE A AI +NG + +++ G K S + E+ ++T V+ NLS +V L G I ++ + D KGFGF + + A ++ N +I GKPI Sbjct: 62 ADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV---------FVGPFKSSKERGQPTEV---------------------KFTNVFFKNLSEDVGPDQLKELLQQ--YGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12 Identity = 57/217 (26.27%), Postives = 94/217 (43.32%), Query Frame = 1 Query: 16 AIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGN 651 A+ LN I G+P ++ W+ T G NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI +NG L +++ V + + IS+ ++ E+ N +T +Y+ N+ EV + + F G I + RD +GFGFV +STH A A++ N Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKK------------------------VFVGHHISKKDRQSKFEEMKAN---FTNIYIKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284 The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bpback to top |