EY711306

Overview
NameEY711306
Unique NameEY711306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 63/218 (28.90%), Postives = 99/218 (45.41%), Query Frame = 1
Query:   94 EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYT----TVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD------KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWGSKPTPPGT 717
            +D++    VFVG LS  V D  L   F  + T   ARV+ D ++GRS+G+G+V F   E A++A+                 AA G    D +  +     ++L+N    + Q  + + A     Q +    TV+VGNLS   T  DL   F     G I+ +R+  D      KGFG+V +S    A   ++M N   + G+P +  + +  T  G+
Sbjct:  257 QDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV-----------------AANGTKEIDGRMVN-----LDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGG--CGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM-NGHFIAGRPCRLDFSTPRTGGGS 449          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 68/231 (29.44%), Postives = 102/231 (44.16%), Query Frame = 1
Query:   16 AIVTLNGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQR-----DKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678
            AI  LNG  + GQ I V    +     SQ E+T  H+ N++V +++ E TD      F+ F     A +  D   G+ +GFGFV++   EDA  A+  LN   L   ++           G  ++ ++   V++         Q ++         Q   ++V NL   V    L   F     GTI   +V R      KGFGFV +ST  EA+ AI   N +I+ GKP+
Sbjct:  182 AIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYV---------GRAQKKNERMHVLK--------KQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAP--YGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPL 392          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 63/233 (27.04%), Postives = 103/233 (44.21%), Query Frame = 1
Query:    4 DAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678
            D   AI  LN   I G+P ++ W    SQR+ +   +G  N+F+ +L P + +  L   F+ F      +V  D   G S+ FGFV +   E A++AI ++NG  L +R+                        V +   IS+  +E   E+   N   +T VY  N+  + +  +  + F A   G I  + +++D     KGFGFV +  H  A  A+   N + + G+ I
Sbjct:  104 DGEKAIEDLNYSLIEGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDM-GISKCFGFVHYETAEAAEAAIENVNGMLLNDRE------------------------VYVGKHISKKDRESKFEEMKAN---FTNVYAKNIDLDFSEEEFKKLFEA--YGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKI 302          

HSP 2 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 60/234 (25.64%), Postives = 101/234 (43.16%), Query Frame = 1
Query:    7 AWAAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678
            A AAI  +NG  +  + + V    +   RE       +   NV+  ++  + ++      F  +   +   +  D + G+S+GFGFV+F N E A  A+++LN K +  ++I    A K     +E +     + +E                   +  Q   +++ NL   + S  L   F     G+I   RV  D     KGFGFV +S+  EA+ AI   N R++ GKP+
Sbjct:  192 AEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKL-----------------SKYQGVNLFIKNLDDTIDSEKLEEEFKPF--GSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPL 405          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.975e-12
Identity = 57/214 (26.64%), Postives = 96/214 (44.86%), Query Frame = 1
Query:   16 AIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAI 639
            AI  LN   I G+P ++ W+    S R+  SG  N+++ +L P + + +L   FS F      +V  D+  G SRGFGFV F N+ DA+ AI  ++G  + ++++   + A   +  D +   +                        E   ++T VYV N+  E +  +    F     G I    +++D     +GFGFV +  H  A+ A+
Sbjct:   95 AIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDEN-GVSRGFGFVHFENESDARDAIEAVDGMLMNDQEV---YVALHVSKKDRQSKLE------------------------EVKAKFTNVYVKNIDQETSQEEFEELFGK--YGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAV 276          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+     W  +      +KQ    K
Sbjct:  375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+     W  +      +KQ    K
Sbjct:  375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 470          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+     W  +      +KQ    K
Sbjct:  381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 476          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCN---WAAKGATSGDEKQSSDSK 390
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+     W  +      +KQ    K
Sbjct:  349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 444          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 64/234 (27.35%), Postives = 97/234 (41.45%), Query Frame = 1
Query:    1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678
            ADA  A+ TLN   I G+  ++ W    SQR+ +   SG  NVF+ +L   +    L+  FS F      +V+ D     S+GFGFV +  QE A  AI  +NG  +  +++           G  K S +     E+                     ++T V+  NLS +V    L         G I ++ +  D     KGFGF  + +   A   ++  N +I  GKPI
Sbjct:   62 ADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV---------FVGPFKSSKERGQPTEV---------------------KFTNVFFKNLSEDVGPDQLKELLQQ--YGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 57/217 (26.27%), Postives = 94/217 (43.32%), Query Frame = 1
Query:   16 AIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGN 651
            A+  LN   I G+P ++ W+        T G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A +AI  +NG  L +++                        V + + IS+  ++   E+   N   +T +Y+ N+  EV   +  + F     G I    + RD     +GFGFV +STH  A  A++  N
Sbjct:   99 ALDELNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKK------------------------VFVGHHISKKDRQSKFEEMKAN---FTNIYIKNIDPEVEDEEFRKLFEKF--GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284          
The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GAR2_SCHPO1.366e-1228.90Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
PABP_YEAST2.331e-1229.44Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA2.331e-1227.04Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASHGO3.975e-1226.64Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBM42_RAT5.192e-1237.50RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm... [more]
RBM42_MOUSE5.192e-1237.50RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE... [more]
RBM42_HUMAN5.192e-1237.50RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_BOVIN5.192e-1237.50RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
PAP1A_DICDI5.192e-1227.35Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PABP_EMENI5.192e-1226.27Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-B12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bp
GCGGACGCGTGGGCTGCAATTGTGACTCTTAATGGAAGGCACATATTTGG
ACAACCTATTAAAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACA
CATCAGGTCATTTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACA
GATGCTACTTTGTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGC
AAGGGTTATGTGGGACCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTG
TTTCTTTTCGGAATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAAT
GGGAAGTGGCTTGGTAATAGACAGATTCGGTGCAACTGGGCTGCAAAAGG
TGCTACCTCTGGTGATGAAAAGCAAAGTTCAGATTCCAAAAGTGTTGTAG
AGCTTACAAATGGAATATCTGAAGATGGTCAAGAGAAGAGCAATGAGGAT
GCTCCGGAGAACAATCCTCAGTATACAACTGTTTATGTTGGCAATCTTTC
TTCAGAGGTTACCTCAGTTGATCTCCACCGACATTTTCATGCTCTTTGTG
TTGGAACAATTGAAGATGTTCGGGTACAGCGAGACAAGGGTTTCGGGTTT
GTGAGATACTCTACACATCCTGAAGCTTCCCTGGCTATTCAGATGGGTAA
TGCTCGGATTCTTTGCGGCAAACCAATTAAGTGTTCGTGGGGAAGTAAAC
CAACTCCCCCAGGAACAGCTCTACTCCTCTTCCTCCACCTCCTGCACCAC
ATTTGTCAGGTTTCTCAGCCACAGACCTTCCCTGCTATGAGCGACAGATA
CCTTTGACACAATAGCTGGGGCACCAGCCCTTAATGCTCCCCATGCACAG
CATGCTCCTTACCTTGGAATGGTTGTGCTGGGGCTATTCAAGCATTCATG
A
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