EY711306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12 Identity = 62/206 (30.10%), Postives = 89/206 (43.20%), Query Frame = 1 Query: 88 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV------QRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCS 687 + + S +FVG+L A L F V++D+ TGRSRGFGFV+ ++E+ ++A NG L R +R N SG + ++ S E N G N VYVGNL+ V L F G + D +V R +GFGFV YS+ E + AI+ + L G+ I+ S Sbjct: 79 EERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-------SGPPPEKRENSSFRE--NSSFRGGSRGGGSFDSSNR-----VYVGNLAWGVDQDALETLFSE--QGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.157e-11 Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1 Query: 103 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 330 S F +F GDL EV D L FS +P+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK 365
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.157e-11 Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 1 Query: 64 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 345 V+W S +T F +F GDL EV D L FS +P+ A+V+ D++TG+++G+GFVSF++ D A+ ++NG+++G+R I+ +A Sbjct: 288 VSWEDTSLLEWETDD-FRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSA 380
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11 Identity = 61/209 (29.19%), Postives = 84/209 (40.19%), Query Frame = 1 Query: 79 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV------QRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCS 687 A + + S +FVG+L V A L F V++D+ TGRSRGFGFV+ + + ++A NG L R +R N D S +G G + VYVGNLS V + L F G + + RV R KGFGFV Y + E AI+ + L G+ I+ S Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSG--------NRVYVGNLSWGVDDMALESLFSE--QGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11 Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1 Query: 22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693 V LN R ++ K A+ R D + NVFV ++ ++ D L F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K E + + + +EKS P +Y+ NL + L F + G+I +V + KGFG V +S+ EA+ A+ N RI+ KP+ + G Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11 Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1 Query: 22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693 V LN R ++ K A+ R D + NVFV ++ ++ D L F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K E + + + +EKS P +Y+ NL + L F + G+I +V + KGFG V +S+ EA+ A+ N RI+ KP+ + G Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11 Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1 Query: 22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693 V LN R ++ K A+ R D + NVFV ++ ++ D L F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K E + + + +EKS P +Y+ NL + L F + G+I +V + KGFG V +S+ EA+ A+ N RI+ KP+ + G Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11 Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1 Query: 22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693 V LN R ++ K A+ R D + NVFV ++ ++ D L F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K E + + + +EKS P +Y+ NL + L F + G+I +V + KGFG V +S+ EA+ A+ N RI+ KP+ + G Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11 Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1 Query: 22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693 V LN R ++ K A+ R D + NVFV ++ ++ D L F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K E + + + +EKS P +Y+ NL + L F + G+I +V + KGFG V +S+ EA+ A+ N RI+ KP+ + G Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11 Identity = 62/230 (26.96%), Postives = 106/230 (46.09%), Query Frame = 1 Query: 7 AWAAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 A AAI TLN + + I V + R + + N+++ +L +V++ L F+ F + D+ RG+ FV+F N EDA+ A +NG G+ +C + + + +Q + E +EK E + + + +YV N++ VT +L +HF GTI ++ D KGFGFV +ST EA A++ + ++ GKP+ Sbjct: 165 AHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGS---KCLYVGRAQKKAEREQL------------LREQFKEKHEEQ--KMIAKVSNIYVKNVNVAVTEEELRKHFSQ--CGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374 The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bpback to top |