EY711306

Overview
NameEY711306
Unique NameEY711306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 62/206 (30.10%), Postives = 89/206 (43.20%), Query Frame = 1
Query:   88 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV------QRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCS 687
            +  + S    +FVG+L      A L   F          V++D+ TGRSRGFGFV+  ++E+ ++A    NG  L  R +R N       SG   +  ++ S  E  N     G          N      VYVGNL+  V    L   F     G + D +V       R +GFGFV YS+  E + AI+  +   L G+ I+ S
Sbjct:   79 EERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-------SGPPPEKRENSSFRE--NSSFRGGSRGGGSFDSSNR-----VYVGNLAWGVDQDALETLFSE--QGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 268          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.157e-11
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  103 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 330
            S  F +F GDL  EV D  L   FS +P+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+
Sbjct:  290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK 365          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.157e-11
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   64 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 345
            V+W   S    +T   F +F GDL  EV D  L   FS +P+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NG+++G+R I+   +A
Sbjct:  288 VSWEDTSLLEWETDD-FRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSA 380          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 61/209 (29.19%), Postives = 84/209 (40.19%), Query Frame = 1
Query:   79 ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV------QRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCS 687
            A  + +  S    +FVG+L   V  A L   F          V++D+ TGRSRGFGFV+  +  + ++A    NG  L  R +R N         D        S     +G    G   +             VYVGNLS  V  + L   F     G + + RV       R KGFGFV Y +  E   AI+  +   L G+ I+ S
Sbjct:   80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSG--------NRVYVGNLSWGVDDMALESLFSE--QGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1
Query:   22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693
            V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K      E +    +  +          +EKS        P    +Y+ NL   +    L   F +   G+I   +V  +    KGFG V +S+  EA+ A+   N RI+  KP+  + G
Sbjct:  168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1
Query:   22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693
            V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K      E +    +  +          +EKS        P    +Y+ NL   +    L   F +   G+I   +V  +    KGFG V +S+  EA+ A+   N RI+  KP+  + G
Sbjct:  168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1
Query:   22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693
            V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K      E +    +  +          +EKS        P    +Y+ NL   +    L   F +   G+I   +V  +    KGFG V +S+  EA+ A+   N RI+  KP+  + G
Sbjct:  168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1
Query:   22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693
            V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K      E +    +  +          +EKS        P    +Y+ NL   +    L   F +   G+I   +V  +    KGFG V +S+  EA+ A+   N RI+  KP+  + G
Sbjct:  168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 62/229 (27.07%), Postives = 100/229 (43.67%), Query Frame = 1
Query:   22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693
            V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K      E +    +  +          +EKS        P    +Y+ NL   +    L   F +   G+I   +V  +    KGFG V +S+  EA+ A+   N RI+  KP+  + G
Sbjct:  168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 62/230 (26.96%), Postives = 106/230 (46.09%), Query Frame = 1
Query:    7 AWAAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD-----KGFGFVRYSTHPEASLAIQMGNARILCGKPI 678
            A AAI TLN   +  + I V      + R +    + N+++ +L  +V++  L   F+ F       +  D+     RG+ FV+F N EDA+ A   +NG   G+   +C +  +     + +Q             + E  +EK  E   +   + + +YV N++  VT  +L +HF     GTI   ++  D     KGFGFV +ST  EA  A++  + ++  GKP+
Sbjct:  165 AHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGS---KCLYVGRAQKKAEREQL------------LREQFKEKHEEQ--KMIAKVSNIYVKNVNVAVTEEELRKHFSQ--CGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPL 374          
The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ROC1_NICPL6.781e-1230.1030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM42_XENTR1.157e-1142.11RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]
RBM42_DANRE1.157e-1137.23RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]
ROC1_ARATH1.511e-1129.19Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP5_PONPY1.511e-1127.07Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.511e-1127.07Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_HYLLA1.511e-1127.07Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN1.511e-1127.07Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.511e-1127.07Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABPX_ARATH1.973e-1126.96Probable polyadenylate-binding protein At2g36660 O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-B12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bp
GCGGACGCGTGGGCTGCAATTGTGACTCTTAATGGAAGGCACATATTTGG
ACAACCTATTAAAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACA
CATCAGGTCATTTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACA
GATGCTACTTTGTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGC
AAGGGTTATGTGGGACCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTG
TTTCTTTTCGGAATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAAT
GGGAAGTGGCTTGGTAATAGACAGATTCGGTGCAACTGGGCTGCAAAAGG
TGCTACCTCTGGTGATGAAAAGCAAAGTTCAGATTCCAAAAGTGTTGTAG
AGCTTACAAATGGAATATCTGAAGATGGTCAAGAGAAGAGCAATGAGGAT
GCTCCGGAGAACAATCCTCAGTATACAACTGTTTATGTTGGCAATCTTTC
TTCAGAGGTTACCTCAGTTGATCTCCACCGACATTTTCATGCTCTTTGTG
TTGGAACAATTGAAGATGTTCGGGTACAGCGAGACAAGGGTTTCGGGTTT
GTGAGATACTCTACACATCCTGAAGCTTCCCTGGCTATTCAGATGGGTAA
TGCTCGGATTCTTTGCGGCAAACCAATTAAGTGTTCGTGGGGAAGTAAAC
CAACTCCCCCAGGAACAGCTCTACTCCTCTTCCTCCACCTCCTGCACCAC
ATTTGTCAGGTTTCTCAGCCACAGACCTTCCCTGCTATGAGCGACAGATA
CCTTTGACACAATAGCTGGGGCACCAGCCCTTAATGCTCCCCATGCACAG
CATGCTCCTTACCTTGGAATGGTTGTGCTGGGGCTATTCAAGCATTCATG
A
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