EY711306

Overview
NameEY711306
Unique NameEY711306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 61/229 (26.64%), Postives = 100/229 (43.67%), Query Frame = 1
Query:   22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693
            V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K      E +    +  +          +EKS        P    +Y+ NL   +    L   F +   G+I   +V  +    KGFG V +S+  EA+ A+   N R++  KP+  + G
Sbjct:  168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLG 376          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 52/211 (24.64%), Postives = 90/211 (42.65%), Query Frame = 1
Query:   88 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWGSKPTP 708
            + E+T     +FVG LS  + D  L   F        ARV++++ T RSRG+G+V F N+  A+ AI ++ GK +  R I C+ +       +++                     K   D P       T+++GNLS       +     +H   + V        ++ KGFG+V++S   +A  A+       +  +P++  + S P P
Sbjct:  160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDR--------------------AKKFGDTPSEPSD--TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF-SSPRP 347          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 61/206 (29.61%), Postives = 90/206 (43.69%), Query Frame = 1
Query:   88 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV------QRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCS 687
            +  + S    +FVG+L      A L   F          V++D+ TGRSRGFGFV+  ++E+ ++A    NG  L  R +R N       SG   +  ++ S      G S  G    + +          VYVGNL+  V    L   F     G + D +V       R +GFGFV YS+  E + AI+  +   L G+ I+ S
Sbjct:   79 EERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-------SGPPPEKRENSSF----RGGSRGGGSFDSSN---------RVYVGNLAWGVDQDALETLFSE--QGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 56/218 (25.69%), Postives = 89/218 (40.83%), Query Frame = 1
Query:    1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEASLAI 639
            AD   A+  LN   I  +P ++ W+        T G  N+++ +L P + +  L   FS F      ++  D+  G SRGFGFV + + E A+SAI  +NG  L ++++   +        D  QS +                        E    +T V++ NL +E+T  +     +    G    V +      +  GFGFV Y  H  A  AI
Sbjct:   98 ADGIRALEELNYSPIKERPCRIMWSQRDPALRKT-GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKV---FVGPHVPKSDRMQSFE------------------------EQKNSFTNVFIKNLGTEITEAEFEELVNKF--GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.365e-11
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 330
            F +F GDL  EV D  L   FS +P+   A+V+ D++TG+++G+GFVSF++  D   A  ++NGK++G+R I+
Sbjct:  293 FRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIK 365          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: YDB2_SCHPO (Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe GN=SPAC22E12.02 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 37/125 (29.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:   19 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGD-EKQSSDSK 390
            +V   G  ++  P  + W            HF +FVG+L  +V D +L+  FS +P+    +V+ D++ G++RGFGFVSF++ +    A  + NGK++G+R ++ + A       +  +++ DSK
Sbjct:    8 VVRKAGGQVWEDPTLLEW---------DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122          
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 62/231 (26.84%), Postives = 104/231 (45.02%), Query Frame = 1
Query:   16 AIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678
            +I  +NG  + G+ + V       +RE   G       NV+V + + +  D  L   F  +   +  +VM  ++ G+S+GFGFV+F   E A++A+  LNGK +G  + +  + A+     + +Q    K          E+ ++K +E     N     +YV NL   +    L   F     G I   +V      R KGFGFV ++   EA+ A+   N R++  KP+
Sbjct:  146 SIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG--EGKSLYVARAQKKAERQQELKRK---------FEELKQKRHESVFGVN-----LYVKNLDDTIDDDRLRIAFSP--YGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357          
The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
PABP5_MACMU1.973e-1126.64Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
NSR1_YEAST1.973e-1124.64Nuclear localization sequence-binding protein OS=S... [more]
ROC1_NICSY2.577e-1129.6129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
PABP_YARLI2.577e-1125.69Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBM42_XENLA3.365e-1142.47RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 ... [more]
YDB2_SCHPO9.792e-1129.60Uncharacterized RNA-binding protein C22E12.02 OS=S... [more]
PABP_DROME9.792e-1126.84Polyadenylate-binding protein OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-B12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bp
GCGGACGCGTGGGCTGCAATTGTGACTCTTAATGGAAGGCACATATTTGG
ACAACCTATTAAAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACA
CATCAGGTCATTTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACA
GATGCTACTTTGTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGC
AAGGGTTATGTGGGACCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTG
TTTCTTTTCGGAATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAAT
GGGAAGTGGCTTGGTAATAGACAGATTCGGTGCAACTGGGCTGCAAAAGG
TGCTACCTCTGGTGATGAAAAGCAAAGTTCAGATTCCAAAAGTGTTGTAG
AGCTTACAAATGGAATATCTGAAGATGGTCAAGAGAAGAGCAATGAGGAT
GCTCCGGAGAACAATCCTCAGTATACAACTGTTTATGTTGGCAATCTTTC
TTCAGAGGTTACCTCAGTTGATCTCCACCGACATTTTCATGCTCTTTGTG
TTGGAACAATTGAAGATGTTCGGGTACAGCGAGACAAGGGTTTCGGGTTT
GTGAGATACTCTACACATCCTGAAGCTTCCCTGGCTATTCAGATGGGTAA
TGCTCGGATTCTTTGCGGCAAACCAATTAAGTGTTCGTGGGGAAGTAAAC
CAACTCCCCCAGGAACAGCTCTACTCCTCTTCCTCCACCTCCTGCACCAC
ATTTGTCAGGTTTCTCAGCCACAGACCTTCCCTGCTATGAGCGACAGATA
CCTTTGACACAATAGCTGGGGCACCAGCCCTTAATGCTCCCCATGCACAG
CATGCTCCTTACCTTGGAATGGTTGTGCTGGGGCTATTCAAGCATTCATG
A
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