EY711306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11 Identity = 61/229 (26.64%), Postives = 100/229 (43.67%), Query Frame = 1 Query: 22 VTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQRD----KGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWG 693 V LN R ++ K A+ R D + NVFV ++ ++ D L F + +V+ D +G+S+GFGFV + E AQ A+ DL+GK + + + A K E + + + +EKS P +Y+ NL + L F + G+I +V + KGFG V +S+ EA+ A+ N R++ KP+ + G Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRL----------KEKS-------RPPGVPIYIKNLDETINDEKLKEEFSSF--GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLG 376
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.973e-11 Identity = 52/211 (24.64%), Postives = 90/211 (42.65%), Query Frame = 1 Query: 88 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLH----RHFHALCVGTIEDVRVQRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCSWGSKPTP 708 + E+T +FVG LS + D L F ARV++++ T RSRG+G+V F N+ A+ AI ++ GK + R I C+ + +++ K D P T+++GNLS + +H + V ++ KGFG+V++S +A A+ + +P++ + S P P Sbjct: 160 KNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDR--------------------AKKFGDTPSEPSD--TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF-SSPRP 347
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11 Identity = 61/206 (29.61%), Postives = 90/206 (43.69%), Query Frame = 1 Query: 88 QREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRV------QRDKGFGFVRYSTHPEASLAIQMGNARILCGKPIKCS 687 + + S +FVG+L A L F V++D+ TGRSRGFGFV+ ++E+ ++A NG L R +R N SG + ++ S G S G + + VYVGNL+ V L F G + D +V R +GFGFV YS+ E + AI+ + L G+ I+ S Sbjct: 79 EERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-------SGPPPEKRENSSF----RGGSRGGGSFDSSN---------RVYVGNLAWGVDQDALETLFSE--QGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.577e-11 Identity = 56/218 (25.69%), Postives = 89/218 (40.83%), Query Frame = 1 Query: 1 ADAWAAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEASLAI 639 AD A+ LN I +P ++ W+ T G N+++ +L P + + L FS F ++ D+ G SRGFGFV + + E A+SAI +NG L ++++ + D QS + E +T V++ NL +E+T + + G V + + GFGFV Y H A AI Sbjct: 98 ADGIRALEELNYSPIKERPCRIMWSQRDPALRKT-GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKV---FVGPHVPKSDRMQSFE------------------------EQKNSFTNVFIKNLGTEITEAEFEELVNKF--GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.365e-11 Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 112 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 330 F +F GDL EV D L FS +P+ A+V+ D++TG+++G+GFVSF++ D A ++NGK++G+R I+ Sbjct: 293 FRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATREMNGKYVGSRPIK 365
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: YDB2_SCHPO (Uncharacterized RNA-binding protein C22E12.02 OS=Schizosaccharomyces pombe GN=SPAC22E12.02 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 37/125 (29.60%), Postives = 68/125 (54.40%), Query Frame = 1 Query: 19 IVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGD-EKQSSDSK 390 +V G ++ P + W HF +FVG+L +V D +L+ FS +P+ +V+ D++ G++RGFGFVSF++ + A + NGK++G+R ++ + A + +++ DSK Sbjct: 8 VVRKAGGQVWEDPTLLEW---------DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSK 122
BLAST of EY711306 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11 Identity = 62/231 (26.84%), Postives = 104/231 (45.02%), Query Frame = 1 Query: 16 AIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDSKSVVELTNGISEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHFHALCVGTIEDVRVQ-----RDKGFGFVRYSTHPEASLAIQMGNARILCGKPI 678 +I +NG + G+ + V +RE G NV+V + + + D L F + + +VM ++ G+S+GFGFV+F E A++A+ LNGK +G + + + A+ + +Q K E+ ++K +E N +YV NL + L F G I +V R KGFGFV ++ EA+ A+ N R++ KP+ Sbjct: 146 SIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG--EGKSLYVARAQKKAERQQELKRK---------FEELKQKRHESVFGVN-----LYVKNLDDTIDDDRLRIAFSP--YGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357 The following BLAST results are available for this feature:
BLAST of EY711306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711306 ID=EY711306; Name=EY711306; organism=Citrus sinensis; type=EST; length=901bpback to top |