EY711287

Overview
NameEY711287
Unique NameEY711287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.182e-35
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   11 AFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            AF+ LQ   +R  KTEY+SCP CGRTLFDL E++  IREKT HL G+ IA+MGCIVNGPGEMAD+DFG+VG   G IDLYV  T VK  I ME A + L++L+++HG W +P
Sbjct:  494 AFSTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIREKTKHLVGLKIAVMGCIVNGPGEMADSDFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELVRLLQEHGVWKDP 605          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_PROMM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispG PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.258e-35
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 349
            +++LQ   +R T  EY+SCPSCGRTLF+L+E+  ++R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ ++  +  DALIQLIKD GRW +PP
Sbjct:  296 YSILQSIGLRKTMVEYISCPSCGRTLFNLEEVVQKVRDSTSHLVGLDIAVMGCIVNGPGEMADADYGYVGKGPGVISLYRGRDEIRK-VSESEGVDALIQLIKDDGRWVDPP 406          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  490 FLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  490 FLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  490 FLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            F +LQ   +R+   EYVSCP CGRTLFDL  +S  IRE+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  I +E A + L+QL+K+HG W EP
Sbjct:  490 FLILQSANIRSVTVEYVSCPGCGRTLFDLLAVSQRIRERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEP 601          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.579e-34
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   11 AFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            AF  LQ   +R  KTEY+SCP CGRTLFDL E++  IR KT HL G+ IA+MGCIVNGPGEMADADFG+VG   G IDLYV  T VK  I ME A + L +L+++HG W +P
Sbjct:  494 AFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIRNKTKHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELFRLLQEHGVWKDP 605          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlorobium tepidum GN=ispG PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.337e-33
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            FN+LQ  R+R +KTE++SCP CGRT F+L++ +A I+++ SHL G+ I IMGCIVNGPGEMADADFGYVG   G++ LYVGK  V+  I   +A + LI+LI+ +G+W +P
Sbjct:  635 FNILQAARIRMSKTEFISCPGCGRTYFELEKTTALIKQRVSHLKGLKIGIMGCIVNGPGEMADADFGYVGSGKGRVSLYVGKECVEENIPEAEALERLIELIRQNGKWVDP 745          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.280e-33
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRW 337
            F +LQ  R R +KTEY+SCPSCGRTL+DLQ   A I+E TSHL G+ I IMGCIVNGPGEMADAD+GYVG   G+I LY GK  V + I  E A + L+QLIK++G W
Sbjct:  502 FGILQATRTRISKTEYISCPSCGRTLYDLQTTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGQISLYKGKECVLKNIPEEDAVERLVQLIKENGDW 609          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.978e-33
Identity = 64/111 (57.66%), Postives = 86/111 (77.48%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +  E+  +ALIQLIK+ GRW EP
Sbjct:  288 YSILQSLGLRKTMVEYVACPSCGRTLFNLEEVLHKVRDATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGRDEIRK-VPEEEGVNALIQLIKEDGRWVEP 397          
The following BLAST results are available for this feature:
BLAST of EY711287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ISPG_CHLCV3.182e-3560.714-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMM9.258e-3558.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR1.209e-3462.504-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB1.209e-3462.504-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA1.209e-3462.504-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT21.209e-3462.504-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF1.579e-3460.714-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTE1.337e-3355.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD82.280e-3362.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX2.978e-3357.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711287 ID=EY711287; Name=EY711287; organism=Citrus sinensis; type=EST; length=743bp
CCACGCGTCCGCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAA
AGACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTT
CAAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGT
TTCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTG
ATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTAT
GTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGA
TGCCTTGATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCG
CAGAAGAGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACT
CAGTTGAAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACA
TGGCACAAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCA
GATGGAGCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTG
TATGCAGATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCC
TACATTTTGTTTTCCTACACAAACCAAATAATAATGTATTTCCTATGGCA
TATATTAGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGGTTCTCTT
CTATGAGAAATGTTTCNGAAAAAAAAAAAAAAAAAAAAAAAAA
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