EY711287

Overview
NameEY711287
Unique NameEY711287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. GN=ispG PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.080e-33
Identity = 66/114 (57.89%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   11 AFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPPA 352
            A+ +LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY GK  VKR +   +   ALI LIK  GRW +PP+
Sbjct:  295 AYGILQALNLRKTMVEYVACPSCGRTLFNLEEVLQKVRAATQHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGKEEVKR-VPESEGVQALIDLIKADGRWVDPPS 407          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.665e-33
Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   11 AFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 349
            A+ +LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY GK  VK+ +   +   ALI+LIK  GRW +PP
Sbjct:  295 AYGILQALNLRKTMVEYVACPSCGRTLFNLEEVLQKVRAATQHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGKEEVKK-VPESEGVQALIELIKADGRWVDPP 406          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_BACFR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis GN=ispG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.665e-33
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    5 ASAFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 343
            A+AF +LQ  R+R +KTEY+SCP CGRTLF+LQ   A ++E TSHL G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  E+A + LI+LIK +G + E
Sbjct:  500 ATAFGILQAGRIRTSKTEYISCPGCGRTLFNLQSTIARVKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECIEKNIPEEEAVEKLIELIKANGDYEE 612          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_BACFN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.665e-33
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    5 ASAFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 343
            A+AF +LQ  R+R +KTEY+SCP CGRTLF+LQ   A ++E TSHL G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  E+A + LI+LIK +G + E
Sbjct:  500 ATAFGILQAGRIRTSKTEYISCPGCGRTLFNLQSTIARVKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECIEKNIPEEEAVEKLIELIKANGDYEE 612          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9605) GN=ispG PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.930e-32
Identity = 63/111 (56.76%), Postives = 84/111 (75.68%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +   +  +ALIQLIK+ GRW EP
Sbjct:  288 YSILQSLGLRKTMVEYVACPSCGRTLFNLEEVLHKVRNATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGRDEIRK-VPEAEGVEALIQLIKEDGRWVEP 397          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_PROMP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.616e-32
Identity = 64/111 (57.66%), Postives = 84/111 (75.68%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EY+SCPSCGRTLF+L+E+  ++R+ TSHL G+ IAIMGCIVNGPGEMADAD+GYVG   G I LY  K  +KR +  ++  DALI+LIKD G+W +P
Sbjct:  296 YSILQSLGLRKTMVEYISCPSCGRTLFNLEEVVDKVRKATSHLTGLDIAIMGCIVNGPGEMADADYGYVGKGKGTIALYRRKEEIKR-VPEDEGVDALIRLIKDDGKWIDP 405          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP6 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +KR +  EQ  + LI LIK  GRW EP
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRAATNHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGTIALYRGRDEIKR-VPEEQGVEELINLIKADGRWVEP 403          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 349
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +   Q  + LI LIK  GRW +PP
Sbjct:  295 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATNHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGREEIRK-VPEAQGVEELINLIKADGRWVDPP 405          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNE7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +KR +  EQ  + LI LIK  GRW EP
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRAATNHLVGLDIAVMGCIVNGPGEMADADYGYVGKTPGTIALYRGRDEIKR-VPEEQGVEELINLIKADGRWVEP 403          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9311) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.580e-32
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            F++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY  +  +++ +   +  +AL+QLIKD GRW EP
Sbjct:  288 FSILQALGIRKTMVEYVACPSCGRTLFNLEEVLHQVRNATCHLTGLDIAVMGCIVNGPGEMADADYGYVGKGPGVIALYRNRDEIRK-VPESEGVEALVQLIKDDGRWVEP 397          
The following BLAST results are available for this feature:
BLAST of EY711287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ISPG_SYNJB5.080e-3357.894-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJA8.665e-3357.524-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFR8.665e-3358.414-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFN8.665e-3358.414-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNSC1.930e-3256.764-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMP5.616e-3257.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP67.335e-3257.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP27.335e-3255.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNE77.335e-3257.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS39.580e-3255.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711287 ID=EY711287; Name=EY711287; organism=Citrus sinensis; type=EST; length=743bp
CCACGCGTCCGCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAA
AGACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTT
CAAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGT
TTCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTG
ATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTAT
GTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGA
TGCCTTGATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCG
CAGAAGAGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACT
CAGTTGAAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACA
TGGCACAAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCA
GATGGAGCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTG
TATGCAGATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCC
TACATTTTGTTTTCCTACACAAACCAAATAATAATGTATTTCCTATGGCA
TATATTAGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGGTTCTCTT
CTATGAGAAATGTTTCNGAAAAAAAAAAAAAAAAAAAAAAAAA
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