EY711287

Overview
NameEY711287
Unique NameEY711287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.580e-32
Identity = 64/112 (57.14%), Postives = 82/112 (73.21%), Query Frame = 2
Query:    8 SAFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 343
            +AF +LQ  R+R +KTEY+SCP CGRTL+DL+   A I+  TSHL G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  +QA + LI+LIK +G + E
Sbjct:  502 TAFGILQAGRIRTSKTEYISCPGCGRTLYDLESTIARIKTATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKKKECIEKNIPEDQAVEKLIELIKANGDYTE 613          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=ispG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +  +Q    LI+LIK  GRW EP
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKR-VPEDQGVQELIELIKADGRWVEP 406          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +  ++  + LI LIK  GRW +P
Sbjct:  299 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRESTKHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK-VPEDKGVEELINLIKADGRWVDP 408          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.787e-31
Identity = 61/111 (54.95%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +  ++  + LI LIK  GRW +P
Sbjct:  299 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVRESTKHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK-VPEDKGVEELINLIKADGRWVDP 408          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_THEEB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispG PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            + +LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G++IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  VK+ +   +   AL++LIK  GRW +P
Sbjct:  293 YGILQALGLRRTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLNIAVMGCIVNGPGEMADADYGYVGKQPGYISLYRGREEVKK-VPEAEGVAALVELIKADGRWVDP 402          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 60/112 (53.57%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   11 AFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            A+++LQ   +R T  EY+SCPSCGRTLF+L+E+ A++R+ TSHL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +++ +  ++   AL++LIK  G+W +P
Sbjct:  297 AYSILQTVGLRKTMVEYISCPSCGRTLFNLEEVVAKVRDATSHLTGLDIAVMGCIVNGPGEMADADYGYVGKGKGIIALYRGREEIRK-VPEDEGVSALVELIKSDGKWIDP 407          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_BACTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 2
Query:    5 ASAFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 325
            A+AF +LQ  R R +KTEY+SCP CGRTL+DL++  A I+  TSHL G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY GK  V++ I  E+A + L++ I++
Sbjct:  500 ATAFGILQAGRTRTSKTEYISCPGCGRTLYDLEKTIARIKAATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKGKVCVEKNIPEEEAVERLLEFIRN 606          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispG PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  VK+ +  +Q  + LI LIK  GRW +P
Sbjct:  298 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGHISLYRGREEVKK-VPEDQGVEELINLIKADGRWVDP 407          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_ACAM1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispG PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.110e-31
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++R  T+HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  VK+ +   +  + LI LIK  GRW +P
Sbjct:  298 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHQVRSATNHLTGLDIAVMGCIVNGPGEMADADYGYVGKQPGYISLYRGREEVKK-VPETEGVEELINLIKSDGRWVDP 407          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_GLOVI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Gloeobacter violaceus GN=ispG PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.059e-30
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            + +LQ   +R T  EYV+CPSCGRTLF+L+ +   +RE T HL G++IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +   +  +AL+ LIK  GRW +P
Sbjct:  287 YGILQALGLRRTMVEYVACPSCGRTLFNLETVLHRVREATRHLTGLNIAVMGCIVNGPGEMADADYGYVGKTPGTISLYRGREEIKK-VPEARGVEALVDLIKSDGRWVDP 396          
The following BLAST results are available for this feature:
BLAST of EY711287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ISPG_BACV89.580e-3257.144-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP82.787e-3156.764-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT2.787e-3154.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANASP2.787e-3154.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEEB3.640e-3155.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA3.640e-3153.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACTN3.640e-3157.944-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP48.110e-3155.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACAM18.110e-3154.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GLOVI1.059e-3054.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711287 ID=EY711287; Name=EY711287; organism=Citrus sinensis; type=EST; length=743bp
CCACGCGTCCGCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAA
AGACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTT
CAAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGT
TTCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTG
ATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTAT
GTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGA
TGCCTTGATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCG
CAGAAGAGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACT
CAGTTGAAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACA
TGGCACAAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCA
GATGGAGCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTG
TATGCAGATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCC
TACATTTTGTTTTCCTACACAAACCAAATAATAATGTATTTCCTATGGCA
TATATTAGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGGTTCTCTT
CTATGAGAAATGTTTCNGAAAAAAAAAAAAAAAAAAAAAAAAA
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