EY711287

Overview
NameEY711287
Unique NameEY711287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_NOSP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispG PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.383e-30
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +  ++  + LI LIK   RW EP
Sbjct:  299 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK-VPEDKGVEELINLIKADERWVEP 408          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=ispG PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.383e-30
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +Q  + LI LIK  GRW +P
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWVDP 406          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_TRIEI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=ispG PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+ +  E+RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +   Q  + LI LIK  GRW EP
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLENVLHEVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQSGYISLYRGREEIKK-VHESQGVEELINLIKADGRWVEP 406          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +Q  + LI LIK  GRW +P
Sbjct:  295 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWIDP 404          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.257e-30
Identity = 58/111 (52.25%), Postives = 83/111 (74.77%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EY++CPSCGRTLF+L+++  ++R  TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +  ++   ALIQLI++ G W +P
Sbjct:  288 YSILQSLGLRKTMVEYIACPSCGRTLFNLEDVLHKVRNATSHLKGLDIAVMGCIVNGPGEMADADYGYVGKGPGIIALYRGREEIRK-VPEKEGVQALIQLIQEDGLWVDP 397          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYNY3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.171e-29
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+++  E+RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +        LI LIK  GRW +P
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEDVLHEVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYIALYRGREEIKR-VPETDGVQELINLIKADGRWVDP 403          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_MICAN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.171e-29
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 346
            +++LQ   +R T  EYV+CPSCGRTLF+L+++  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +   +    LI LIK  GRW EP
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLEDVLQQVRAATQHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKR-VPESEGVSELINLIKADGRWVEP 406          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_SYMTH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Symbiobacterium thermophilum GN=ispG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIK 322
            + +L+   +R      +SCPSCGR   DL +++ E+  +  H+   +++A+MGC+VNGPGE A+AD    GG  G   LYVG   V++    E+  +AL++L++
Sbjct:  247 YEILKALGLRTRGINIISCPSCGRVQIDLVKVANEVERRLQHIDVPLNVAVMGCVVNGPGEAAEADVALFGG-KGVGMLYVGGERVRK-TTEEEMVEALVELVE 348          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_KOCRD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=ispG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 2
Query:   20 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALI 310
            +LQ   +R  K E VSCPSCGR   D+ +++ E+ E  +HL   + +A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K  +  +Q  + L+
Sbjct:  265 ILQSLGLRPRKLEIVSCPSCGRAQVDVYKLAEEVNEGLAHLTVPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVRGEVIKT-VPEDQIVETLL 360          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_THETN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 35/105 (33.33%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   20 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGK--TVVKRGIAMEQATDALIQLIKD 325
            +L+   +     E +SCP+CGRT  D+ +++ E+  +TSH+   + +A+MGC+VNGPGE  +AD G  GG    +    GK   +VK    +E+    + +++K+
Sbjct:  250 ILRALGLLKEGVEVISCPTCGRTKIDVIKLATEVERRTSHIKKPLKVAVMGCVVNGPGEAKEADIGIAGGDREGVIFKKGKIYKIVKEEHLLEELLKEIEKMVKE 354          
The following BLAST results are available for this feature:
BLAST of EY711287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ISPG_NOSP71.383e-3054.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP71.383e-3054.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TRIEI1.807e-3055.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA51.807e-3054.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS95.257e-3052.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNY31.171e-2954.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MICAN1.171e-2954.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYMTH4.471e-1336.544-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_KOCRD9.960e-1339.804-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THETN2.219e-1233.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711287 ID=EY711287; Name=EY711287; organism=Citrus sinensis; type=EST; length=743bp
CCACGCGTCCGCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAA
AGACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTT
CAAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGT
TTCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTG
ATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTAT
GTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGA
TGCCTTGATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCG
CAGAAGAGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACT
CAGTTGAAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACA
TGGCACAAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCA
GATGGAGCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTG
TATGCAGATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCC
TACATTTTGTTTTCCTACACAAACCAAATAATAATGTATTTCCTATGGCA
TATATTAGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGGTTCTCTT
CTATGAGAAATGTTTCNGAAAAAAAAAAAAAAAAAAAAAAAAA
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