EY711287

Overview
NameEY711287
Unique NameEY711287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_BIFLO (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bifidobacterium longum GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 2
Query:   20 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 325
            LL+   +R  K + +SCPSCGR   D+ ++++ + E    +   + +A+MGCIVNGPGE  +AD G   G  GK  +++   V+K  +  +Q  D L+ +  D
Sbjct:  275 LLEYMGLRPRKFDIISCPSCGRAQVDVIQLASAVTEGLKDVTAPIRVAVMGCIVNGPGEAREADLGVASG-NGKGQIFIKGKVIKT-VPEDQIVDTLLTIAND 375          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_ARTCA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   20 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 313
            +LQ   +R  K E VSCPSCGR   D+  ++ ++   T+ L G+ I    A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K  +   Q  + LI+
Sbjct:  265 ILQSLNLRPRKLEIVSCPSCGRAQVDVYTLAEQV---TAGLEGMEIPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVKGEVIKT-VPESQIVETLIE 361          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_MYCGA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycoplasma gallisepticum GN=ispG PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   11 AFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRE--KTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLI 319
            A  +L    +     + V+CP+CGR  FDL +++ EI E  K  H P + ++I+GC VNGPGE  +AD G  GG   +  +   K VV + +  E   D L Q+I
Sbjct:  245 AKKMLNSLGLYENLVDVVACPTCGRLNFDLFKVTKEIEEFVKDLHFP-LKVSILGCSVNGPGEAKEADIGIAGGK--QEGIIFKKGVVVKSVKQEYLVDELKQMI 346          
BLAST of EY711287 vs. ExPASy Swiss-Prot
Match: ISPG_AZOVD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ispG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 2
Query:   14 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIK 322
            F++L+   +R+    +++CPSC R  FD+ +   E+  +   L   + +A++GC+VNGPGE  +A  G  GG P  +    GK   K G   E   D L +LI+
Sbjct:  252 FDILKSLHLRSRGINFIACPSCSRQNFDVVKTMNELETRLEDLLVPLDVAVIGCVVNGPGEAKEAHVGLTGGTPNNLVYIDGKPAQKLG--NENLVDELERLIR 353          
The following BLAST results are available for this feature:
BLAST of EY711287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ISPG_BIFLO4.185e-1134.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ARTCA5.465e-1139.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCGA9.322e-1137.144-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AZOVD9.322e-1133.654-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711287 ID=EY711287; Name=EY711287; organism=Citrus sinensis; type=EST; length=743bp
CCACGCGTCCGCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAA
AGACGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTT
CAAGAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGT
TTCGATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTG
ATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTAT
GTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGA
TGCCTTGATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCG
CAGAAGAGTAGGATATGGTAATTTCCATCAACAGATATACAATAAAGACT
CAGTTGAAGGGAGACCACCATACCCCAGCTGTTGTATATTAAATTCCACA
TGGCACAAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCA
GATGGAGCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCTCAAGTG
TATGCAGATAAAGCTGTAACACTCCCATTAGTAACAAGTCCAATGTTTCC
TACATTTTGTTTTCCTACACAAACCAAATAATAATGTATTTCCTATGGCA
TATATTAGCTTCTAGTGAAACCACTTGAGTTATGTCTGTGGGGTTCTCTT
CTATGAGAAATGTTTCNGAAAAAAAAAAAAAAAAAAAAAAAAA
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