EY711199

Overview
NameEY711199
Unique NameEY711199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVDDHL+CDI+G+HLT AAI+G DGSVWAQS++FPQ  P
Sbjct:    1 MSWQAYVDDHLLCDIEGNHLTHAAIIGQDGSVWAQSTDFPQFKP 44          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF_MUSAC (Profilin OS=Musa acuminata PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVDDHL+CDIDG  LT+AAIVGHDGSVWAQS  FPQ  P
Sbjct:    1 MSWQAYVDDHLLCDIDGQCLTAAAIVGHDGSVWAQSDAFPQCKP 44          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF4_MAIZE (Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVD+HLMC+I+G HL++AAIVGHDGSVWAQS +FP++ P
Sbjct:    1 MSWQAYVDEHLMCEIEGQHLSAAAIVGHDGSVWAQSESFPELKP 44          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF3_WHEAT (Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSW+ YVDDHL C+IDG +LTSAAI+GHDGSVWAQS NFPQ  P
Sbjct:    1 MSWKAYVDDHLCCEIDGQNLTSAAILGHDGSVWAQSPNFPQFKP 44          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF2_PARJU (Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDI-DGHHLTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVDDHLMCD+ DG+ L SAAI+GHDGSVWAQS+NFPQ+ P
Sbjct:    1 MSWQAYVDDHLMCDVGDGNTLASAAIIGHDGSVWAQSANFPQLKP 45          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQ 204
            MSWQ YVDDHLMC+I+G+HL++AAI+G DGSVWAQS+NFPQ
Sbjct:    1 MSWQAYVDDHLMCEIEGNHLSAAAIIGQDGSVWAQSANFPQ 41          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF1_HEVBR (Profilin-1 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQ 204
            MSWQTYVD+ LMC+I+G+HLT+AAI+G DGSVWAQSSNFPQ
Sbjct:    1 MSWQTYVDERLMCEIEGNHLTAAAIIGQDGSVWAQSSNFPQ 41          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF3_OLEEU (Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVDDHLMCDI+GH    LT+AAIVGHDGSVWAQS+ FPQ  P
Sbjct:    1 MSWQAYVDDHLMCDIEGHEGHRLTAAAIVGHDGSVWAQSATFPQFKP 47          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF2_OLEEU (Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVDDHLMCDI+GH    LT+AAIVGHDGSVWAQS+ FPQ  P
Sbjct:    1 MSWQAYVDDHLMCDIEGHEGHRLTAAAIVGHDGSVWAQSATFPQFKP 47          
BLAST of EY711199 vs. ExPASy Swiss-Prot
Match: PROF1_OLEEU (Profilin-1 OS=Olea europaea GN=PRO1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   82 MSWQTYVDDHLMCDIDGHH---LTSAAIVGHDGSVWAQSSNFPQVIP 213
            MSWQ YVDDHLMCDI+GH    LT+AAIVGHDGSVWAQS+ FPQ  P
Sbjct:    1 MSWQAYVDDHLMCDIEGHEDHRLTAAAIVGHDGSVWAQSATFPQFKP 47          
The following BLAST results are available for this feature:
BLAST of EY711199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PROF1_SOYBN3.093e-1475.00Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1[more]
PROF_MUSAC4.040e-1479.55Profilin OS=Musa acuminata PE=1 SV=1[more]
PROF4_MAIZE4.040e-1472.73Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1[more]
PROF3_WHEAT4.040e-1477.27Profilin-3 OS=Triticum aestivum GN=PRO3 PE=2 SV=1[more]
PROF2_PARJU4.040e-1477.78Profilin-2 OS=Parietaria judaica GN=PRO2 PE=1 SV=1[more]
PROF2_HEVBR4.040e-1478.05Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF1_HEVBR4.040e-1480.49Profilin-1 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF3_OLEEU5.276e-1476.60Profilin-3 OS=Olea europaea GN=PRO3 PE=1 SV=1[more]
PROF2_OLEEU5.276e-1476.60Profilin-2 OS=Olea europaea GN=PRO2 PE=1 SV=1[more]
PROF1_OLEEU5.276e-1476.60Profilin-1 OS=Olea europaea GN=PRO1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-A04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711199 ID=EY711199; Name=EY711199; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCGAGGGGAAGGAATTAACATAGGAATTAAACAAACAATT
GAATTTGCCGTGAGAATTTAGATTGTTGAAAATGTCGTGGCAAACATACG
TTGATGATCATCTGATGTGCGATATCGACGGCCATCATCTCACCTCAGCT
GCGATCGTCGGTCACGACGGCAGCGTTTGGGCCCAGAGCTCCAATTTCCC
TCAGGTTATACCAAATCTCTCTTGTTTATCTCTTCGATTTTATTTACCGA
TCTGTTATTAATTTATTGTTACGTTCCATTTTCTAATTGCACGGATCTGA
TTGTTCCAATTTTTATTTTTTTTGGCTTAATTGATAATTATTAGCATTCA
GATTAGTTTGTTGCCATGATTTGAATCAAAAGTAAAAATGAAAATGTTAG
ATTTACGTTTTTAGATTGTAAAAATTAAGAATTTTACTGAAAACCAGAAT
AAATTATGAAACTGTAAGTATAAAAATCAAAACTTGTATATGATGATATA
GGTTGTATTTGCTTGTGGCTTTACAATGACCATTTCGTAATTCACTATTA
ATCTTGAGAAAATTATAGAATTTTCAAATAAAAAATAGATAAAAAAAAAT
GTGTTGCTAATGTTAAGACTGTCAAGGGCATGTTTGTTAATGTTGAGTTT
CTGATAATTTTGCAAACACACAGCTAAGTGNTTATGAGCACTCAGTCTCT
AATGATTCCATTCCACACAGCTGTGGCTTAAAAGCATATCTCCTCATTCC
AAGATAATTAAATGATTTGGAGATTTTTATTTTTGGGTTTCATATGCAAT
TTATTGGTTTGTTCCAGAATTTTTGTTGNAAATGCTATCAGGAACTTTCT
CAATCTCAAATACAAATTTATTTNC
back to top