EY711198

Overview
NameEY711198
Unique NameEY711198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 8.300e-98
Identity = 179/280 (63.93%), Postives = 208/280 (74.29%), Query Frame = 1
Query:   34 KREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPP*GHLGDXKGIAGXXNGANSSSMI-XXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREHIPLFRLLLPPFK 870
            K   + R  V  A +  T SP    + P GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA+ PTFTA+G E+SVG NHLGHF          ++SDYPS+R++IVGSITGN+NTLAGNVPP   LGD +G+AG  +GA+ S+MI              SKVCNMLT  EFHRR+HEETGI F    P CIATTGL REHIPLFR L PPF+
Sbjct:   39 KASLAVRTQVATAPSSVTTSPGSATAKPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGNVPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQ 318          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 2.189e-90
Identity = 165/242 (68.18%), Postives = 189/242 (78.10%), Query Frame = 1
Query:  148 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPP*GHLGDXKGIAGXXNGANSSSMI-XXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREHIPLFRLLLPPFK 870
            V+ITGASSGLGLA AKALAETGKWH++MACRDFLKA +AAK+AGMA  +YT+MHLDLASLDSVRQFVD FRR+  PLDVLVCNAA+Y PTA++PTFTAEG E+SVG NHLGHF          ++SDYPS+RL+IVGSITGN NTLAGNVPP  +LGD +G+AG   GA+ S+MI              SKVCNMLT  EFHRR+HE+TGI F    P CIATTGL REHIPLFR L PPF+
Sbjct:    2 VVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYRPTARKPTFTAEGVEMSVGVNHLGHFLLARLLLEDLQKSDYPSRRLVIVGSITGNDNTLAGNVPPKANLGDLRGLAGGLTGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQ 243          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.201e-88
Identity = 163/263 (61.98%), Postives = 191/263 (72.62%), Query Frame = 1
Query:   82 ATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPP*GHLGDXKGIAGXXNGANSSSMIXXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREHIPLFRLLLPPFK 870
            A  +PA  ++ P  KKT  K + IITGASSGLGLATAKALA+TG+WH+IMACRDFLKAERAA+S G+ K++YT++H DLAS DSVR FVD FRR+ R LDVLVCNAAVY PT KEP F+AEGFELSVGTNH+GHF          +++    KR+IIVGSITGN+NT+AGNVPP  +LG  +G+AG  NG NSSSMI             SKVCNM T  EFHRR+H ETGI F    P CIA TGL R H+ LFR L PPF+
Sbjct:  126 AVTAPAETMNKPSSKKTATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAARSVGIPKDSYTVIHCDLASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSAEGFELSVGTNHMGHFLLARLLMEDLQKAKDSLKRMIIVGSITGNSNTVAGNVPPKANLGHLRGLAGGLNGVNSSSMIDGGEFDGAKAYKDSKVCNMFTMQEFHRRYHAETGITFSSLYPGCIAETGLFRNHVTLFRTLFPPFQ 388          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 4.283e-78
Identity = 160/294 (54.42%), Postives = 190/294 (64.63%), Query Frame = 1
Query:    4 RVRSSSALRCKREFSQRNGVVRAQTMATASPAV-DVSSPQG----KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPP*GHLGDXKGIAGXXNGANSSSMIXXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREHIPLFRLLLPPFK 870
            RV  + AL  +   ++   VV A T    SP++ D   P        T +K + IITGASSGLGL  AKALA TG+WH++MACRDFLKAE+AAK  GM   +Y+I+HLDL+SL+SVRQFV  F+ SGR LD LVCNAAVYLPTAKEP FTA+GFELSVGTNHLGHF          K +     R IIVGSITGNTNTLAGNVPP  +LGD  G+A     AN   M+             SKV  M+T  + H+RFH+ TGI F    P CIA TGL REH+PLF+ L PPF+
Sbjct:   35 RVMPAPALAARSSVARTPLVVCAATATAPSPSLADKFKPNAIARVPATQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKVGMPAGSYSILHLDLSSLESVRQFVQNFKASGRRLDALVCNAAVYLPTAKEPRFTADGFELSVGTNHLGHFLLTNLLLDDLKNAPNKQPRCIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGVPAAN--PMMDGQEFNGAKAYKDSKVACMMTVRQMHQRFHDATGITFASLYPGCIAETGLFREHVPLFKTLFPPFQ 326          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.097e-57
Identity = 117/252 (46.43%), Postives = 155/252 (61.51%), Query Frame = 1
Query:  136 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGN--VPP*GHLGDXKGIAGXXNGANSSSMIXXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREHIPLFRLLLPPFKSTSPG 885
            +K +V+ITGASSG+GL  AKAL + G WH++MACR+  KA+ AAKS GM+ ++YT+MH+DL SLDSVR+FV  FR SG+ LD LVCNAAV++P  KEP  + EG+ELSV TNH GHF          K S +   RLII+G++T N+  L G   +P    LGD  G+          +MI             SK+CNM+T  E HRR+H+ TGI F    P C+A T L R  +P+F+ + P F+    G
Sbjct:    5 QKPTVVITGASSGVGLYAAKALVKRG-WHVVMACRNLEKADSAAKSLGMSPDSYTLMHIDLGSLDSVRKFVTQFRESGKSLDALVCNAAVHMPLLKEPMRSPEGYELSVATNHFGHFLLCNLLLEDLKHSTHNDPRLIILGTVTANSKELGGKIPIPAPADLGDLSGLEAGFKA--PIAMIDGKPFKAGKAYKDSKLCNMITSRELHRRYHDSTGIVFNTLYPGCVADTPLFRNSLPVFQKVFPWFQKNITG 253          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.255e-53
Identity = 117/246 (47.56%), Postives = 145/246 (58.94%), Query Frame = 1
Query:  139 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGN--VPP*GHLGDXKGIAGXXNGANSSSMIXXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREHIPLFRLLLPPFK 870
            K +VIITGASSG+GL  AKAL + G WH+IMACR+  K ++ A   G  K++YTI+ LDL  LDSVR+FV  FR  GRPL  LVCNAAVY P   EP ++A+ +ELSV TNHLGHF          K      KRLII+G++T N+  L G   +P    LG+ +G           +MI             SK+CNMLT  E HRRFH+ETGI F    P C+A T L R H  LFR + P F+
Sbjct:    6 KPTVIITGASSGVGLYGAKALIDKG-WHVIMACRNLDKTQKVADELGFPKDSYTIIKLDLGYLDSVRRFVAQFRELGRPLKALVCNAAVYFPLLDEPLWSADDYELSVATNHLGHFLLCNLLLEDLKACPDADKRLIILGTVTANSKELGGKIPIPAPPDLGNFEGFEAGFK--KPIAMINNKKFKSGKAYKDSKLCNMLTTRELHRRFHQETGIVFNSLYPGCVADTPLFRNHYSLFRTIFPWFQ 248          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.227e-16
Identity = 81/251 (32.27%), Postives = 119/251 (47.41%), Query Frame = 1
Query:  148 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPP*GHLGDXKGIAGXXNGANSSSMIXXXXXXXXXXXXXSKVCNMLTHAEFHRRFHEETGIAFGFPLPXCIATTGLXREH---IPLFRLLLPPFKSTSPG 885
            +I+TGA+SG+G  TA++ A  G  H+I+ACR+  +A +AA       +K    ++ LDLASL SVRQF + F+ +  PL VLVCNAAV    ++    T +GFE +    HLGHF          + S     R+++V S +     L  +    G+L D   ++      N  S++             +K+CN+L  +E HRR     GI      P  +  T + R       LF L  P  KS   G
Sbjct:  124 IIVTGANSGIGFETARSFALHGA-HVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAV---CSQPWRLTEDGFESTFQICHLGHFLLVQLLQDVLRLS--APARVVVVSSESHRFTDLLDSC---GNL-DLDLLSPPQK--NYWSLL---------AYNRAKLCNLLFSSELHRRMSPH-GICCNALHPGSMMFTSIHRSWWLLTLLFSLARPFTKSMQQG 352          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.038e-15
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  124 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE-GFELSVGTNHLGHF 486
            K T+   +VI+TGA++G+G  TA  LA  G  +II+ACRD  K E AAK       N+ +   HLDLASL S+R+F          +D+L+ NA V     + P +T E GFE+  G NHLGHF
Sbjct:   33 KATIPGKTVIVTGANTGIGKQTALELARRGG-NIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGV----MRCPHWTTEDGFEMQFGVNHLGHF 151          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  148 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 486
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     M LDLA L SV+ F + F+    PL VLVCNAA +   A   + T +G E +   NHLGHF
Sbjct:  127 VVVTGANSGIGFETAKSFALHGA-HVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATF---ALPWSLTKDGLETTFQVNHLGHF 237          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 58/167 (34.73%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  106 VSSPQGKKTLRKGS-----------VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSI 564
            +++PQ +K L  G            V++TGA++G+G  TAK LA+ G   + +ACRD  K E  AK       N  ++   LDL+   S+R F   F    + L VL+ NA V + P +K    TA+GFE+ +G NHLGHF          K+S     R++ V S+
Sbjct:   19 MAAPQIRKMLSSGVCTSTVQLPGKVVVVTGANTGIGKETAKELAQRGA-RVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSK----TADGFEMHIGVNHLGHFLLTHLLLEKLKES--APSRIVNVSSL 178          
The following BLAST results are available for this feature:
BLAST of EY711198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PORA_WHEAT8.300e-9863.93Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_AVESA2.189e-9068.18Protochlorophyllide reductase (Fragment) OS=Avena ... [more]
POR_MARPA1.201e-8861.98Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_CHLRE4.283e-7854.42Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_PLEBO1.097e-5746.43Light-dependent protochlorophyllide reductase OS=P... [more]
POR_SYNY31.255e-5347.56Light-dependent protochlorophyllide reductase OS=S... [more]
WWOX_DANRE1.227e-1632.27WW domain-containing oxidoreductase OS=Danio rerio... [more]
RDH13_HUMAN1.038e-1543.55Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
WWOX_HUMAN3.946e-1542.61WW domain-containing oxidoreductase OS=Homo sapien... [more]
RDH11_HUMAN5.154e-1534.73Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711198 ID=EY711198; Name=EY711198; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGCAGCTCTTCTGCATTAAGATGCAAGAGAGAATTCAGCCA
AAGAAATGGGGTGGTAAGAGCCCAAACGATGGCTACTGCCTCTCCAGCAG
TCGATGTTTCTTCCCCACAAGGGAAGAAAACTCTCAGAAAAGGCAGCGTT
ATAATCACCGGCGCATCGTCTGGATTGGGGCTGGCCACAGCTAAGGCTTT
AGCTGAAACTGGGAAATGGCATATAATCATGGCCTGCAGGGATTTTCTCA
AGGCTGAAAGAGCCGCCAAGTCGGCTGGCATGGCTAAGGAGAACTACACT
ATCATGCATTTAGATCTGGCTTCCCTTGACAGTGTTCGCCAATTTGTTGA
TACCTTCAGGCGATCAGGCAGACCTCTCGATGTGCTAGTTTGCAATGCTG
CTGTTTATTTGCCAACTGCTAAGGAGCCTACATTTACGGCTGAGGGATTT
GAACTTAGTGTTGGAACCAACCATCTTGGTCACTTCCTCCTTTCACGGCT
GTTGCTTGATGACTTGAAGCAATCTGATTACCCATCAAAGCGTCTCATCA
TCGTTGGCTCAATCACAGGAAACACAAATACCTTGGCTGGTAATGTACCT
CCCTAAGGCCACCTTGGGGACTTNAAGGGGATTGCTGGANGCTTNAATGG
GGCTAACAGCTCATCCATGATTGACGGTGGAGATTTTGACGGTGCCNAGG
GCTACNAGGACAGCAAAGTCTGCAACATGCTTACCCATGCAGAGTTTCAC
AGGCGGTTCCACGAGGAAACTGGCATCGCATTCGGCTTCCCTTTACCTGN
CTGCATTGCAACNACAGGCTTGNTCAGGGAGCACATTCCCTTGTTCAGAC
TTCTTCTCCCCCCATTCAAAAGTACATCACCAGGGTTATGTCTCTGAAAA
TGAACTGGAAAAGACAT
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