EY711198

Overview
NameEY711198
Unique NameEY711198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  148 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHF 486
            V++TGA+SG+G  TAK+ A  G  H+I+ACR+  +A  A         K     M LDLA L SV+ F + F+     L VLVCNA  + LP       T +G E +   NHLGHF
Sbjct:  127 VLVTGANSGIGFETAKSFALHGA-HVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWG----LTKDGLETTFQVNHLGHF 237          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: DHRSX_MOUSE (Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 54/149 (36.24%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  151 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSK--RLIIVGSITGNTNTL 585
            I+TGA++G+G +TA+ LA  G   +++A  D  + +    S  A M  +    + LDLASL SVR F   F+  G PL +LV NA V L    E   T +GFE  +G N LGHF          + S    +  R++ VGS T    T+
Sbjct:   47 IVTGATAGIGRSTARQLARLGMC-VVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAE---TEDGFERHLGVNFLGHFLLTLLLLPALRASGAEGRGSRVVTVGSATHYVGTV 191          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: WWOX_DROME (WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  127 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE----RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 486
            K L   + +ITGA+ G+G  TA++LA  G   II ACR+   AE    R A+    A+       LDL+SL SV++FV+  ++S   +D L+ NA V+   A   T T +G E +   +HL HF
Sbjct:  117 KDLHGRTALITGANCGIGYETARSLAHHG-CEIIFACRNRSSAEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVF---ALPYTRTVDGLETTFQVSHLSHF 236          
BLAST of EY711198 vs. ExPASy Swiss-Prot
Match: DHR13_BOVIN (Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 52/150 (34.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:  118 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGS 561
            +G  +LR  + ++TGA+SG+G  TA  LA  G   +++ACR   + E AA        N  +  M LDLASL SVR F   F  S   LD+L+ NA +          T E F L +  NH+G F          K S     R+++V S
Sbjct:   29 RGLASLRGRTAVVTGANSGIGKMTALELARRGA-RVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGI-----SSCGRTREPFNLLLRVNHIGPFLLTHLLLPRLKTS--APSRVVVVSS 170          
The following BLAST results are available for this feature:
BLAST of EY711198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
WWOX_MOUSE2.828e-1341.38WW domain-containing oxidoreductase OS=Mus musculu... [more]
DHRSX_MOUSE6.300e-1336.24Dehydrogenase/reductase SDR family member on chrom... [more]
WWOX_DROME2.027e-1137.90WW domain-containing oxidoreductase OS=Drosophila ... [more]
DHR13_BOVIN5.897e-1134.67Dehydrogenase/reductase SDR family member 13 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-005-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711198 ID=EY711198; Name=EY711198; organism=Citrus sinensis; type=EST; length=917bp
CCACGCGTCCGCAGCTCTTCTGCATTAAGATGCAAGAGAGAATTCAGCCA
AAGAAATGGGGTGGTAAGAGCCCAAACGATGGCTACTGCCTCTCCAGCAG
TCGATGTTTCTTCCCCACAAGGGAAGAAAACTCTCAGAAAAGGCAGCGTT
ATAATCACCGGCGCATCGTCTGGATTGGGGCTGGCCACAGCTAAGGCTTT
AGCTGAAACTGGGAAATGGCATATAATCATGGCCTGCAGGGATTTTCTCA
AGGCTGAAAGAGCCGCCAAGTCGGCTGGCATGGCTAAGGAGAACTACACT
ATCATGCATTTAGATCTGGCTTCCCTTGACAGTGTTCGCCAATTTGTTGA
TACCTTCAGGCGATCAGGCAGACCTCTCGATGTGCTAGTTTGCAATGCTG
CTGTTTATTTGCCAACTGCTAAGGAGCCTACATTTACGGCTGAGGGATTT
GAACTTAGTGTTGGAACCAACCATCTTGGTCACTTCCTCCTTTCACGGCT
GTTGCTTGATGACTTGAAGCAATCTGATTACCCATCAAAGCGTCTCATCA
TCGTTGGCTCAATCACAGGAAACACAAATACCTTGGCTGGTAATGTACCT
CCCTAAGGCCACCTTGGGGACTTNAAGGGGATTGCTGGANGCTTNAATGG
GGCTAACAGCTCATCCATGATTGACGGTGGAGATTTTGACGGTGCCNAGG
GCTACNAGGACAGCAAAGTCTGCAACATGCTTACCCATGCAGAGTTTCAC
AGGCGGTTCCACGAGGAAACTGGCATCGCATTCGGCTTCCCTTTACCTGN
CTGCATTGCAACNACAGGCTTGNTCAGGGAGCACATTCCCTTGTTCAGAC
TTCTTCTCCCCCCATTCAAAAGTACATCACCAGGGTTATGTCTCTGAAAA
TGAACTGGAAAAGACAT
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