EY711190

Overview
NameEY711190
Unique NameEY711190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.709e-32
Identity = 82/227 (36.12%), Postives = 125/227 (55.07%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 718
            SP L  G +S R ++  V+        E  +  ++S +  +  +  R++ R+++    Y ++    G L  K F W  D+  F+ WR G+TGYPLVDA MREL  TG++ +R R  V+SF  K L + WRWG ++F   L+D D+ S+   W Y +G   D R F   + P+ +  ++DP G Y+R WLPEL  LP + IH PW    +  +  G++LG +YP P V
Sbjct:  253 SPWLALGCLSPRFIYQEVK------RYEQERVSNDSTHWLIFELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPK-QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCV 470          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_HALSA (Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarium GN=phr PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.756e-31
Identity = 77/229 (33.62%), Postives = 122/229 (53.28%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE-YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH--HPWNAPESVLQAAGIELGSNYPFPIV 718
            LSPHL FG + +R V+   R  +     +  +   E+V  F+  +  RE Y++ + FN     E     +     W  D    +AW+ G TGYP+VDAGMR+L A  ++H+R+R++V++F  K L + WR G  +F + L D D  +D  GWQ+ + T  D + + R+ NP  +G ++DP+ +Y+  ++PEL  +P + IH  H  +  E    A        YP PIV
Sbjct:  243 LSPHLKFGTIGIRTVYEAARAAKSDADTDDER---ENVAAFIGQLAWREFYAQVLYFNQNVVSEN-FKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHA------PEYPDPIV 461          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.108e-31
Identity = 87/234 (37.18%), Postives = 118/234 (50.43%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFS--WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI-DAAK 736
            SP L  G +S R +   VR        E  +  ++S    +  +  R+Y R++S  H  +  R   G L+  +  W  D   F+ W+ G TGYPLVDA MREL  TG++ +R R  V+SF  K L + WRWG ++F   L+D D+ S+   W Y +G   D R F R  N   +   +D  GEY + WLPEL  L    IH PW       Q  G  LG  YP PIV + D+AK
Sbjct:  250 SPWLAQGCLSPRMIADHVR------RYEEERVKNKSTYWMIFELLWRDYFRWISRKHGATLFRA--GGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGF-RFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLFDSAK 474          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.311e-30
Identity = 71/202 (35.15%), Postives = 105/202 (51.98%), Query Frame = 2
Query:  125 EGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 730
            E  +  +E     +  +  R++ ++    +  +  +P     +   W  D   F+ W  G TG P VDA MREL  TG++ +R R  V+SF   VL + WRWG  YF   L+D D+ S+   W Y +G   D R  DR  + + +  ++D + EY+  WLPELA LP    H PW   E+  +  G+ELG +YP P+V IDA
Sbjct:  270 EDERVANEDTYWLVFELAWRDFFQFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DRYFDVRSQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVVDIDA 469          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_BUCBP (Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=phrB PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.376e-30
Identity = 74/236 (31.36%), Postives = 124/236 (52.54%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLV---------RIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF-FSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 718
            LS HL  G +S R+   L+         ++++  W NE               +  RE+ +++ + +P   +   L H +    W  +  Y   W+QG TGYP++DAGMR+L   GW+ +R+R++ +SF VK L + WR G +YF   L+D D  S+   WQ+I+    D   + RI NP  +  KFD N +++R+++PEL+ + T  IH+P +  ++       ++ S YP PI+
Sbjct:  242 LSAHLSIGVISPRQCVTLLFKEYPDIIHKLEECKWINE---------------LLWREFYQHLLYFYPNIGQNQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVKNLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAKFIRKYIPELSNVSTYNIHNPCDNNKT------NKIHSKYPQPII 456          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRY1_AEDAE (Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.376e-30
Identity = 81/243 (33.33%), Postives = 130/243 (53.50%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI------DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 733
            +S  L FG +SVR  +  V    ++V   N+    G + +      +  REY   MS ++P+  E    P+  ++ ++    D      W++GRTG+P++DA MR+L A GWLH  +R + ++F  +  L + W  G+++F   LLDAD    A  W ++S +     AF+++       +P     + DP GEYVRR+LPEL  LPT ++H PW AP  V +  G  +G +YP P++ + AA
Sbjct:  265 MSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQHIT---GQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDS--LDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSS-----AFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLDVQKECGCIVGRDYPAPMIDLAAA 497          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_SYNP6 (Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 9.633e-30
Identity = 75/226 (33.19%), Postives = 117/226 (51.77%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 718
            LSP L FG + +R+ +   R    + A   +     S+ ++ + +  RE+ ++  ++ P   + P     + F W   E  F AW Q +TGYP+VDA MR+L  TGW+H+R  ++V+SF  K L + WR G ++F   L+D DL ++  GWQ+ + +  D +   RI NP  +  KFD    Y++RWLPEL  +      HP +     +   G      YP PIV
Sbjct:  243 LSPALKFGAIGIRQAW---RAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPL-RIFNPASQAKKFDATATYIKRWLPELRHV------HPKDLISGEITPIG---RRGYPAPIV 455          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_THET8 (Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.146e-29
Identity = 70/190 (36.84%), Postives = 103/190 (54.21%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 610
            LSP+   G +S R           +W  E  + G E    ++  +  R++S ++ ++ P+  ERPL    + F W  DE  F+AW +G+TG PLVDA MREL ATG+L +R R+  + F VK L LPW+   + F   LLD D   +  GWQ+  G   D   + R+ NP  +G + DP G +++RW PE
Sbjct:  212 LSPYFALGVLSPRLA---------AW--EAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPE 390          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: PHR_THET2 (Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.661e-29
Identity = 70/190 (36.84%), Postives = 102/190 (53.68%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 610
            LSP+   G +S R           +W  E  + G E    ++  +  R++S ++ ++ P+  ERPL    +   W  DE  F+AW +GRTG PLVDA MREL ATG+L +R R+  + F VK L LPW+   + F   LLD D   +  GWQ+  G   D   + R+ NP  +G + DP G +++RW PE
Sbjct:  212 LSPYFALGVLSPRLA---------AW--EAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPE 390          
BLAST of EY711190 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.244e-29
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 2
Query:  263 WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASR 790
            W  D   F+ WR G+TG+PLVDA MREL ATG++ +R R  V+SF  K L + W  G ++F   L+D D+ S+   W Y +G   D R F R  N   +   +DP+G YV+ WLPELA LP   +H PW       +  G+ LG +YP P+V +  +    +   +  W+     R
Sbjct:  318 WKEDWERFELWRTGQTGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARGF-RFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQPVVDLFQSAAANEAIYNAAWEHHHRKR 492          
The following BLAST results are available for this feature:
BLAST of EY711190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CRYD_SYNY32.709e-3236.12Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
PHR_HALSA1.756e-3133.62Deoxyribodipyrimidine photo-lyase OS=Halobacterium... [more]
CRYD_RHOBA5.108e-3137.18Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
CRYD_NATPD3.311e-3035.15Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]
PHR_BUCBP7.376e-3031.36Deoxyribodipyrimidine photo-lyase OS=Buchnera aphi... [more]
CRY1_AEDAE7.376e-3033.33Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1[more]
PHR_SYNP69.633e-3033.19Deoxyribodipyrimidine photo-lyase OS=Synechococcus... [more]
PHR_THET82.146e-2936.84Deoxyribodipyrimidine photo-lyase OS=Thermus therm... [more]
PHR_THET23.661e-2936.84Deoxyribodipyrimidine photo-lyase OS=Thermus therm... [more]
CRYD_GLOVI6.244e-2938.07Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711190 ID=EY711190; Name=EY711190; organism=Citrus sinensis; type=EST; length=920bp
CCACGCGTCCGCCCACGCGTCTGGCGCTACAACCTCATTTCTCTCTCCAC
ATTTGCATTTTGGGGAGGTTAGTGTGAGGAAAGTCTTCCATCTTGTCCGC
ATCAAGCAGGTTTCATGGGCCAATGAAGGGAACAAGGCTGGTGATGAGAG
TGTGAACTTGTTTCTCAAGTCAATTGGTCTTCGGGAATATTCAAGGTACA
TGAGTTTTAACCATCCTTACAGTCATGAAAGGCCTCTTCTTGGGCACCTT
AAGTTCTTTTCTTGGGTTGTGGATGAGGGCTATTTTAAGGCATGGAGGCA
AGGTAGAACTGGTTATCCACTGGTGGATGCTGGCATGAGAGAGTTGTGGG
CCACTGGTTGGCTTCATGATCGGATACGAGTAGTAGTTTCTAGTTTCTTT
GTAAAAGTTCTACAGCTTCCATGGAGATGGGGGATGAAATATTTTTGGGA
TACCCTCTTGGATGCAGATTTAGAAAGTGATGCTCTTGGTTGGCAGTACA
TATCCGGTACTATCCCTGATGGCCGTGCTTTTGACCGAATTGACAATCCA
CAGTTTGAGGGTTACAAGTTTGACCCCAATGGAGAATATGTACGACGGTG
GCTCCCTGAACTTGCCAGACTGCCCACTGAATGGATACACCACCCATGGA
ATGCACCAGAGTCTGTGCTCCAAGCTGCTGGCATTGAGCTGGGTTCCAAT
TACCCTTTTCCCATAGTACGGATTGACGCAGCAAAATGCAGGCTGGACGA
AGCACTTTCAGAAATGTGGCAGCAAGAAGCAGCTTCAAGAGCTGCCATTG
GAAATGGAACTTGAGGAAAGTCTTGGAGACTCTTCTGACTCGGCCCAATT
GCCTTTCTCCCGACATACAGAGGAAGGAATCCCCTGAACTGCTAAGAACA
ACTTCCTACCCAGGTTCGGG
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