EY711189

Overview
NameEY711189
Unique NameEY711189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711189 vs. ExPASy Swiss-Prot
Match: CEMA_LEPTE (Chloroplast envelope membrane protein OS=Leptosira terrestris GN=cemA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.240e-16
Identity = 38/124 (30.65%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  339 QKETIQLIKMHDEDHIHTIFHFSTNTICFVILSGYSILCNEELFILNSWVQEFLYNLSDTIKAFSILFVTDLCIGFHSPRGWELLIGYVYNDFGLAHNDNDIILSVLVSTFPVVLDTFFKYWLF 710
            Q + + L   ++E+ I  I +   + +  + ++        ++ IL S++ E  Y+LS+  ++  I+ VTDL +G+HSP+GW+LL   +   +G    +  + +   + TFPV+LDT FKYW+F
Sbjct:  305 QDKLVALAIQYNEESIDAISNLIGDALTCITITFLFFGLKVQILILQSFLTESFYSLSNANRSLIIIIVTDLLVGYHSPQGWKLLTQLILQHYGFP--ETKLFILCFIGTFPVILDTIFKYWIF 426          

HSP 2 Score: 26.1794 bits (56), Expect = 1.240e-16
Identity = 13/26 (50.00%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  689 IF*ILAFFLLNRVSPSLVVIYHFMTE 766
            IF    F  LNR+SP+ V+ YH M E
Sbjct:  420 IFKYWIFRHLNRISPTTVLTYHRMIE 445          
BLAST of EY711189 vs. ExPASy Swiss-Prot
Match: PCXA_SYNR3 (Proton extrusion protein pcxA OS=Synechococcus sp. (strain RCC307) GN=pcxA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  315 LEKLRIGLQKETIQLIKMHDEDHIHTIFHFSTNTICFVILSGYSILC---NEELFILNSWVQEFLYNLSDTIKAFSILFVTDLCIGFHSPRGWELLIGYVYNDFGLAHNDNDIILSVLVSTFPVVLDTFFKYWLFFY 716
            +E+LR   QK T++  ++ DE    +           V   G+ ++C    +E+ +L  +  E +Y LSD  KAF I+  TD+ +GFHSP GW +L+  + +  G+   +    + + ++TFPV+L T FKYW+F Y
Sbjct:  229 VEELR---QKLTLKAAELKDEADSESTTAIKNVLADVVATIGFVLVCLFGRDEIRVLRGFFDEVVYGLSDNAKAFVIILFTDIFVGFHSPEGWTVLLQGISSHLGIPAEEQ--FIDLFIATFPVILATIFKYWIFRY 360          
BLAST of EY711189 vs. ExPASy Swiss-Prot
Match: CEMA_CHLRE (Chloroplast envelope membrane protein OS=Chlamydomonas reinhardtii GN=cemA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.333e-14
Identity = 41/124 (33.06%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  339 QKETIQLIKMHDEDHIHTIFHFSTNTICFVILSGYSILCNEELFILNSWVQEFLYNLSDTIKAFSILFVTDLCIGFHSPRGWELLIGYVYNDFGLAHNDNDIILSVLVSTFPVVLDTFFKYWLF 710
            Q++TI+L   ++   I  I +F  + +    L    I    ++ I  S++ E  + L D+ K+  IL +TDL +G+HS   WEL   +++N +G+  +   I L  LV+T PV+LD  FKY +F
Sbjct:  360 QEKTIELATYYNNHSIEAITNFFADLLSLFTLLYLLITLEIQINITKSFLLEVFFGLDDSKKSLLILLITDLLVGYHSSNLWELFFEFIFNHYGIPESQTGIFL--LVATLPVLLDVLFKYLIF 481          

HSP 2 Score: 21.1718 bits (43), Expect = 2.333e-14
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 2
Query:  689 IF*ILAFFLLNRVSPSLVVIYHFMTE 766
            +F  L F  LNR SP+ V  Y  + E
Sbjct:  475 LFKYLIFRHLNRSSPATVATYQAIIE 500          
The following BLAST results are available for this feature:
BLAST of EY711189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CEMA_LEPTE1.240e-1630.65Chloroplast envelope membrane protein OS=Leptosira... [more]
PCXA_SYNR36.023e-1632.85Proton extrusion protein pcxA OS=Synechococcus sp.... [more]
CEMA_CHLRE2.333e-1433.06Chloroplast envelope membrane protein OS=Chlamydom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711189 ID=EY711189; Name=EY711189; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGGACGCATAGAATCAACAAATGAGGTGGGTTCATTAACAA
TTCACAGATGAAAAAATGACAAAAAAGAACGCATCCATTCCCCTTAGATA
TCTTTCATCTATAGTATTTGTAGTATTTTTGCCCTGGTGGATCCCTCTCT
CATTTAATAAAAGTCTGGAATCCTGGGTTACTAATTGGTGGAATACTAGT
CAATCCGAAACCTTTTTGAATGATATTCAAGAAAAGGCTATTCTAGAAAA
ATTCATAGAATTAGAGGAATTATTTCTCTTGGACGAAATGATAAAGGAAT
TTCCGGAAAGACGTCTAGAAAAGCTTCGTATAGGGCTCCAGAAAGAAACA
ATCCAATTAATCAAGATGCACGATGAGGATCATATCCATACGATTTTTCA
CTTTTCGACAAATACAATCTGCTTCGTTATTCTAAGTGGTTATTCTATTT
TGTGTAATGAAGAACTTTTTATTCTTAACTCTTGGGTTCAAGAATTCCTA
TATAATTTAAGCGACACAATAAAAGCCTTTTCGATTCTTTTCGTAACTGA
TTTATGTATCGGATTCCATTCACCCCGCGGTTGGGAACTACTGATTGGCT
ATGTCTACAACGACTTTGGGCTTGCTCATAATGATAATGATATTATTCTA
TCTGTTCTTGTTTCCACTTTTCCAGTCGTTCTAGATACATTTTTTAAATA
TTGGCTTTTTTTCTATTAAATCGTGTATCTCCGTCACTTGTAGTGATTTA
TCATTTCATGACTGAGTGAAAAGCGATTCCATGATCCCATTAGAATATTT
TCTATTTTGACATAAGCAAAGCATTCCAAGCTGTACTTACCTTACTTTTT
CTACAAATCAGAGATCCCTCCCAGATTCAGGGAATCTATACTATAACCCA
GTAAATGAATTCG
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