EY711187

Overview
NameEY711187
Unique NameEY711187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 42/154 (27.27%), Postives = 79/154 (51.30%), Query Frame = 1
Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR--DPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI--ATDGSGQSKGFGFVQFENK 672
            +L++ +L+F+ T+ +L ++FS+VG V S  + +  +      S+G+G+V Y  P  A +AL  L    ++   + +  S R   P++         RK  T  I ++N+      + + + FS+FG + + ++     G+G  +GFGFV F  K
Sbjct:  731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTK 884          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:  262 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY----SHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 669
            ++VG+L F+   + L +LF + G V  V V  D  T RS G+G+V  ++  +   A    N   L+ +++R+        R+ S  + G         +  +++ NL   +D  AL   FS  G ++  K+  D  SG+S+GFGFV + +
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 42/152 (27.63%), Postives = 91/152 (59.87%), Query Frame = 1
Query:  241 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF-TPLNNKSIRIMYSH----RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATD-GSGQSKGFGFVQFENKN 675
            N +  T+L++G+L+  VT++ +  +++ +G+ + V++ R+  T  + GY +V +A+P +A+ A+ + N   P  N   ++ ++     R+ SI K+   +IF+ +L  +++   ++  F+S + +  S KI TD  +  S+G+GFV+F ++N
Sbjct:   88 NVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDEN 239          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 36/137 (26.28%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  262 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 669
            +++G L+++ T+  L + F + G V  +++ +D +T RS G+G++++  P+     +   +   L+ K I        P   +  TG IF+  +   +  K   + FS +G I+  ++  D  +GQS+GFGFV +++
Sbjct:  161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVID--PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 293          
The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBM19_HUMAN4.228e-1127.27Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
ROC1_NICSY5.522e-1128.6729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
YG41_SCHPO7.212e-1127.63Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
HRP1_YEAST9.419e-1126.28Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bp
CACTGGTACACCTTCGGCACTATTCCGGAATTCCCTATCCGACCCACGCG
TCCGATAGAATCAGATTATCTTATCCTGTTATCTCTCTAGATTTTTATTT
GAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAG
GATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCA
AATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCC
TAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCG
CAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGT
TTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACT
ACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACT
CCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAG
TATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGT
CTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATT
CTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGG
TTTTGTGCAATTTGAGAACAAGAATCTGCTCAAATGCTATTGATAAGTTA
AATGGCATGCTTTATAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCG
TANGCAGGAAAGAGAACTGTAGCAATAAAACAAATTCATAACGTATTTGT
CAAAAACCTGCTGAGTCACTACGATGAAGATTGAAGAAATTTTTGGTGAG
TTGGAACAATACCATGCANTANTGATGAG
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