EY711187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11 Identity = 42/154 (27.27%), Postives = 79/154 (51.30%), Query Frame = 1 Query: 259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR--DPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI--ATDGSGQSKGFGFVQFENK 672 +L++ +L+F+ T+ +L ++FS+VG V S + + + S+G+G+V Y P A +AL L ++ + + S R P++ RK T I ++N+ + + + FS+FG + + ++ G+G +GFGFV F K Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTK 884
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11 Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 1 Query: 262 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY----SHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 669 ++VG+L F+ + L +LF + G V V V D T RS G+G+V ++ + A N L+ +++R+ R+ S + G + +++ NL +D AL FS G ++ K+ D SG+S+GFGFV + + Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11 Identity = 42/152 (27.63%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 241 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF-TPLNNKSIRIMYSH----RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATD-GSGQSKGFGFVQFENKN 675 N + T+L++G+L+ VT++ + +++ +G+ + V++ R+ T + GY +V +A+P +A+ A+ + N P N ++ ++ R+ SI K+ +IF+ +L +++ ++ F+S + + S KI TD + S+G+GFV+F ++N Sbjct: 88 NVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDEN 239
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11 Identity = 36/137 (26.28%), Postives = 73/137 (53.28%), Query Frame = 1 Query: 262 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 669 +++G L+++ T+ L + F + G V +++ +D +T RS G+G++++ P+ + + L+ K I P + TG IF+ + + K + FS +G I+ ++ D +GQS+GFGFV +++ Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVID--PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 293 The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bpback to top |