EY711187 | Citrus Genome Database

Overview


Name	EY711187
Unique Name	EY711187
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	879

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 174.096 bits (440), Expect = 2.229e-45
Identity = 83/144 (57.64%), Postives = 110/144 (76.39%), Query Frame = 1

Query:  253 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKNLLK 684
            + SLYVGDL+ +V+++ LYD+FS +G V S+RVCRD  T+ SLGY YVN+ +     +A++ LN+TP+  +  RIM+S RDPS+RK G+GNIFIKNL   ID+KAL+DTFS FG+ILS KIATD +G+SKGFGFV FE +   K
Sbjct:   37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAK 180

HSP 2 Score: 30.4166 bits (67), Expect = 2.229e-45
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 2

Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQERE 766
            AID LNGML N ++++V   L  +ER+
Sbjct:  182 AIDALNGMLLNGQEIYVAPHLSRKERD 208

HSP 3 Score: 88.5817 bits (218), Expect = 5.157e-17
Identity = 49/152 (32.24%), Postives = 83/152 (54.61%), Query Frame = 1

Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 663
            T+LYV +++   TD Q  +LF++ G ++S  + +D   +   G+G+VNY    DA +A++ LN + LN + + +                  ++R   + K    N+F+KNLD S+D + L + F+ +G I S K+    +G+SKGFGFV F
Sbjct:  219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK-GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCF 369

HSP 4 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 42/142 (29.58%), Postives = 75/142 (52.82%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI----RIMYSHRDPSIR--KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +L  ++ +  LYD FS  G +LS ++  D    +S G+G+V++     A  A+D LN   LN + I     +    RD  +   K+   N+++KN++     +   + F+ FG I+S  +  D  G+ KGFGFV +E
Sbjct:  127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 6.962e-44
Identity = 80/154 (51.95%), Postives = 113/154 (73.38%), Query Frame = 1

Query:  205 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            SG    AA ++     + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD  T++SLGY YVN+    D  +A++ LN++ +  +  RIM+S RDPS+R++G GNIFIKNL  +ID+KALHDTF++FG ILSCK+ATD  G SK FGFV +E
Sbjct:   34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYE 187

HSP 2 Score: 33.4982 bits (75), Expect = 6.962e-44
Identity = 13/27 (48.15%), Postives = 21/27 (77.78%), Query Frame = 2

Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQERE 766
            AI+ +NGML ND++V+VG  +  ++RE
Sbjct:  195 AIENVNGMLLNDREVYVGKHISKKDRE 221

HSP 3 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 1

Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI---------------MYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            T++Y  ++D + ++ +   LF   G++ S+ + +D    +S G+G+VN+ N   A +A+D LN   +N + I +                Y + R   + K    N+FIKNLD +ID + L + F  FG+I S ++  D +G+SKGFGFV F +
Sbjct:  232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSS 384

HSP 4 Score: 68.1662 bits (165), Expect = 7.637e-12
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI--MYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++++ +L   + +  L+D F+  G++LS +V  D     S  +G+V+Y     A  A++ +N   LN++ + +    S +D   +    K+   N++ KN+D     +     F ++G I S  +  D  G+SKGFGFV FEN
Sbjct:  140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFEN 281

HSP 5 Score: 23.483 bits (49), Expect = 7.637e-12
Identity = 9/26 (34.62%), Postives = 17/26 (65.38%), Query Frame = 2

Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQER 763
            A+D+LN    N ++++VG   + +ER
Sbjct:  288 AVDELNDKEINGQKIYVGRAQKKRER 313

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.078e-44
Identity = 80/139 (57.55%), Postives = 109/139 (78.42%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKN 675
            SLYVG+L+  V+++ LYD+FS +G V S+RVCRD  T  SLGY YVN+ +     +A++ LN+T +  K  RIM+S RDPS+RK G+GNI+IKNL  +ID+K+LH+TFS+FGNILSCK+ATD +G S+GFGFV FEN++
Sbjct:   39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENES 177

HSP 2 Score: 26.5646 bits (57), Expect = 9.078e-44
Identity = 10/28 (35.71%), Postives = 21/28 (75.00%), Query Frame = 2

Query:  683 NAIDKLNGMLYNDKQVFVGHFLRXQERE 766
            +AI+ ++GML ND++V+V   +  ++R+
Sbjct:  181 DAIEAVDGMLMNDQEVYVALHVSKKDRQ 208

HSP 3 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = 1

Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD----------------PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 663
            T++YV ++D   +  +  +LF + G++ S  + +D S  +  G+G+VN+ + A AA+A+D LN      + + +  + +                   + K    N+F+KNLD SID + L + F+ FG I S K+  D +G S+GFGFV F
Sbjct:  219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCF 369

HSP 4 Score: 74.3294 bits (181), Expect = 2.564e-13
Identity = 39/143 (27.27%), Postives = 78/143 (54.55%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY--SHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++Y+ +L   + +  L++ FS  G +LS +V  D     S G+G+V++ N +DA  A++ ++   +N++ + +    S +D   +    K+   N+++KN+D+    +   + F  +G I S  +  D  G+ +GFGFV FE+
Sbjct:  127 NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFED 268

HSP 5 Score: 22.3274 bits (46), Expect = 2.564e-13
Identity = 8/28 (28.57%), Postives = 18/28 (64.29%), Query Frame = 2

Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + A+D+LN + +  ++++VG   +  ER
Sbjct:  273 AKAVDELNELEFKGQKLYVGRAQKKYER 300

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.632e-42
Identity = 81/157 (51.59%), Postives = 112/157 (71.34%), Query Frame = 1

Query:  205 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKN 675
            S     A+  S  +    SLYVG+LD N+T++ LYD+FS +G + S+RVCRD  T+ SLGY YVNY +     +A+  LN+  +N +  RIM+S RDP+IRK G+GNIFIKNL  +ID+KALH+TFS+FG +LSCK+A D +G S+GFGFV F+ ++
Sbjct:   33 SASESEASSVSKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEES 189

HSP 2 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 49/154 (31.82%), Postives = 82/154 (53.25%), Query Frame = 1

Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            T++YV ++D   TD +   LFSQ G+++S  + +D   +   G+G+VN+ +   AA+A++ LN     ++++ +                   +R   + K    N+FIKNLD SID + L + F+ +G I S ++  D  G SKGFGFV F +
Sbjct:  231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPK-GFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSS 383

HSP 3 Score: 73.559 bits (179), Expect = 4.323e-13
Identity = 42/145 (28.97%), Postives = 76/145 (52.41%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKN 675
            ++++ +L   + +  L++ FS  G+VLS +V  D     S G+G+V++   +DA  A++ +N   +N   + + M+  +   I K     +   NI++KN+D     +     FS +G I+S  +  D  G+ KGFGFV F + N
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHN 282

HSP 4 Score: 22.3274 bits (46), Expect = 4.323e-13
Identity = 8/28 (28.57%), Postives = 17/28 (60.71%), Query Frame = 2

Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + A+++LNG  +  + ++VG   +  ER
Sbjct:  285 AKAVEELNGKEFKSQALYVGRAQKKYER 312

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.071e-41
Identity = 81/144 (56.25%), Postives = 107/144 (74.31%), Query Frame = 1

Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKN 675
            ++   SLYVGDL  +VT+  L+  FS VG VLS+R+CRD  TRRSLGY YVN+   ADA +ALD +NF  +  KSIR+M+S RD  +R+SG GN+FIKNLDKSID+K L++ FS+FG ILS K+ +D  G SKG+ FV F+N++
Sbjct:    6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQS 148

HSP 2 Score: 27.7202 bits (60), Expect = 1.071e-41
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 2

Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQERE 766
            AI+++NG L    +VFVG F   ++RE
Sbjct:  153 AIEEMNGKLLKGCKVFVGRFKNRKDRE 179

HSP 3 Score: 86.6557 bits (213), Expect = 3.516e-17
Identity = 49/148 (33.11%), Postives = 83/148 (56.08%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKNLLK 684
            ++++ +LD ++ +  LY+ FS  G++LS +V  D   + S GY +V++ N + A RA++ +N   L    + +        R+  +R   +   N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++    K
Sbjct:   99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244

HSP 4 Score: 23.0978 bits (48), Expect = 3.516e-17
Identity = 9/27 (33.33%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQERE 766
            A++++NG   N + +FVG   +  ER+
Sbjct:  246 AVEEMNGRDINGQLIFVGRAQKKVERQ 272

HSP 5 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = 1

Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS----------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            T++Y+ +   ++ D +L D+FS+ G+ LSV+V  D S+ +S G+G+V++ +   A +A++ +N   +N + I +  + +                   IR      ++IKNLD +ID + L + FSSFG+I   K+  +  GQSKGFG + F +
Sbjct:  190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSS 341

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PAP1B_DICDI (Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum GN=pabpc1B PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.541e-40
Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = 1

Query:  190 HQAQMSGPNGVAAGASGNQFLT-------------TSLYVGDLDFNVTDSQLYDLFSQVGQ--VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKN 675
            HQ   + P G  AGA+G   L+             TSLYVGDL  +V +  L +LFS+VG+  + S+ VCRD +T RSLGY YVN+ N  DA RALD LN+T ++ K  RIM+S+RDP+ RK+  GNIF+KNL+K +D+  L+DTFSSFGNILSCK+  +  G SKG+G+V FE  +
Sbjct:  149 HQHHHTSPMGAGAGAAGMPILSMSPIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETND 324

HSP 2 Score: 74.3294 bits (181), Expect = 1.006e-12
Identity = 46/139 (33.09%), Postives = 75/139 (53.96%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENK 672
            +++V +L+  V ++ LYD FS  G +LS +V  +     S GYGYV++     A +A++ +N T +  K I +         R      +F +N D+SI  + L    S+ FG I SC +  D +G+SKG G V+F+N+
Sbjct:  275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKV--EFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVE-RYKVENKVFFRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQ 410

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.041e-38
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1

Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDS 154

HSP 2 Score: 27.335 bits (59), Expect = 1.041e-38
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2

Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + AI  +NG+  N++QV+VG F   +ER
Sbjct:  159 NRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 3 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.041e-38
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1

Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDS 154

HSP 2 Score: 27.335 bits (59), Expect = 1.041e-38
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2

Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + AI  +NG+  N++QV+VG F   +ER
Sbjct:  159 NRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 3 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.041e-38
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1

Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDS 154

HSP 2 Score: 27.335 bits (59), Expect = 1.041e-38
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2

Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + AI  +NG+  N++QV+VG F   +ER
Sbjct:  159 NRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 3 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247

[Close]

BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.041e-38
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1

Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDS 154

HSP 2 Score: 27.335 bits (59), Expect = 1.041e-38
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2

Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + AI  +NG+  N++QV+VG F   +ER
Sbjct:  159 NRAIWHMNGVRLNNRQVYVGRFKFPEER 186

HSP 3 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1

Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247

The following BLAST results are available for this feature:

BLAST of EY711187 vs. ExPASy Swiss-Prot

BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124


Match Name	E-value	Identity	Description
PABP_YEAST	2.229e-45	57.64	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_DEBHA	6.962e-44	51.95	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASHGO	9.078e-44	57.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_KLULA	4.632e-42	51.59	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAB4L_HUMAN	1.071e-41	56.25	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PAP1B_DICDI	2.541e-40	50.28	Polyadenylate-binding protein 1-B OS=Dictyostelium...	[more]
PABP5_PONPY	1.041e-38	54.23	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	1.041e-38	54.23	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	1.041e-38	54.23	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	1.041e-38	54.23	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-702-004-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bp
CACTGGTACACCTTCGGCACTATTCCGGAATTCCCTATCCGACCCACGCG
TCCGATAGAATCAGATTATCTTATCCTGTTATCTCTCTAGATTTTTATTT
GAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAG
GATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCA
AATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCC
TAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCG
CAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGT
TTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACT
ACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACT
CCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAG
TATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGT
CTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATT
CTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGG
TTTTGTGCAATTTGAGAACAAGAATCTGCTCAAATGCTATTGATAAGTTA
AATGGCATGCTTTATAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCG
TANGCAGGAAAGAGAACTGTAGCAATAAAACAAATTCATAACGTATTTGT
CAAAAACCTGCTGAGTCACTACGATGAAGATTGAAGAAATTTTTGGTGAG
TTGGAACAATACCATGCANTANTGATGAG