EY711187

Overview
NameEY711187
Unique NameEY711187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.041e-38
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1
Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDS 154          

HSP 2 Score: 27.335 bits (59), Expect = 1.041e-38
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + AI  +NG+  N++QV+VG F   +ER
Sbjct:  159 NRAIWHMNGVRLNNRQVYVGRFKFPEER 186          

HSP 3 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.041e-38
Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1
Query:  244 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDS 154          

HSP 2 Score: 27.335 bits (59), Expect = 1.041e-38
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 2
Query:  680 SNAIDKLNGMLYNDKQVFVGHFLRXQER 763
            + AI  +NG+  N++QV+VG F   +ER
Sbjct:  159 NRAIWHMNGVRLNNRQVYVGRFKFPEER 186          

HSP 3 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/143 (33.57%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 666
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.671e-36
Identity = 71/151 (47.02%), Postives = 104/151 (68.87%), Query Frame = 1
Query:  223 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKN 675
            A+ +  +  +T SLYVGDL  +VT+  LYD F++   + SVR+C+D S+ RSL YGY N+ +  DA  A++  N + LN K IR+M+S R P  R++G GN+F+KNL +S+ +  L D F  FGNI+SCK+AT   G+S+G+GFVQFE ++
Sbjct:   13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQED 163          

HSP 2 Score: 26.9498 bits (58), Expect = 2.671e-36
Identity = 10/26 (38.46%), Postives = 17/26 (65.38%), Query Frame = 2
Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQER 763
            AI  LN  +  DK+++VG F++  +R
Sbjct:  168 AIQTLNSTIVADKEIYVGKFMKKTDR 193          

HSP 3 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 48/152 (31.58%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRK------------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 663
            T+LY+ +LD +V++  L + F++ G+++S+ + +D   R   GY +VN+ NP DA RA + +N T   +K + +      + R+  +R+            +   NI++KN++ ++  + L   FS  G I S K+  D  G+SKGFGFV F
Sbjct:  201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCF 351          

HSP 4 Score: 73.1738 bits (178), Expect = 9.461e-13
Identity = 43/139 (30.94%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI--MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            +++V +L  +VT++ L D+F + G ++S +V   L   +S GYG+V +     A  A+  LN T + +K I +       D    +    N+++KNLD  +    L + F+ FG I+S  IA D +   +G+ FV F+N
Sbjct:  113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDN 250          

HSP 5 Score: 21.557 bits (44), Expect = 9.461e-13
Identity = 9/27 (33.33%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  686 AIDKLNGMLYNDKQVFVGHFLRXQERE 766
            A + +NG  +  K ++VG   +  ERE
Sbjct:  257 AAETVNGTKFGSKCLYVGRAQKKAERE 283          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 60/142 (42.25%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKNLLK 684
            ++YVG+L     DS L+ +FS VG+VLSV++ +      S  + +V + N  DA RA+       L+N+ IR+M     P      TGNIF+KNL +    K L D FS FG I+SCK+AT   G+SKG+GFVQF+ K   K
Sbjct:   15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVSS--FAFVTFENEEDAERAIREYKHYELHNRQIRVMKKDERPP----ETGNIFVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAK 150          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  262 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL---DKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN----KNLLKCY 690
            L++GDL   VT+  L  +F +    +S +VC D  T++SLG+GY+N+ +  +A +A++ LN+T +N K IRIM S R+ + RK+   N+F  NL   +  +  +  +DTFS +G ILSCK+        K  GFV FE+    +N++K Y
Sbjct:   93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKL-----DSRKDIGFVYFEDEKTARNVIKMY 237          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.507e-21
Identity = 54/156 (34.62%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  211 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENK 672
            PNG   G +G      T+L V  L  N+T  +   LF  +G + S ++ RD  T +SLGYG+VNY++P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K +   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKR 176          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 54/156 (34.62%), Postives = 89/156 (57.05%), Query Frame = 1
Query:  211 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            PNG   G +G      T+L V  L  N+T  +   LF  +G + S ++ RD  T +SLGYG+VNY++P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K +   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 62/187 (33.16%), Postives = 102/187 (54.55%), Query Frame = 1
Query:  169 MAQIQVQHQAQMSGPNGVAAGA----SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENK 672
            + Q QVQ Q Q +  NG + GA    +G+    T+L V  L   +T+ ++  LFS VG++ SV++ RD S               +SLGYG+VNY  P DA +A++VLN   L NK+I++ ++   PS       N+++  L K++  + L   F+ FG I++ +I  +     Q+KG GF++F+ +
Sbjct:  152 VVQQQVQQQVQQANTNGNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR 336          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 52/148 (35.14%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  232 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            +S  +   T+L V  L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 204          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 53/158 (33.54%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  202 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            ++G NG A  +       T+L V  L  N+T  +   LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++ +L K+++ K +   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   22 LNGTNGEADDSK------TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 171          
The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
PABP5_HUMAN1.041e-3854.23Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.041e-3854.23Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABPX_ARATH2.671e-3647.02Probable polyadenylate-binding protein At2g36660 O... [more]
PABP_ENCCU3.687e-2342.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PES4_YEAST5.324e-2238.00Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]
ELAV3_MOUSE4.507e-2134.62ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV3_HUMAN5.886e-2134.62ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV_DROVI1.311e-2033.16Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV2_XENTR1.311e-2035.14ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV3_XENLA1.713e-2033.54ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bp
CACTGGTACACCTTCGGCACTATTCCGGAATTCCCTATCCGACCCACGCG
TCCGATAGAATCAGATTATCTTATCCTGTTATCTCTCTAGATTTTTATTT
GAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAG
GATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCA
AATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCC
TAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCG
CAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGT
TTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACT
ACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACT
CCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAG
TATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGT
CTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATT
CTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGG
TTTTGTGCAATTTGAGAACAAGAATCTGCTCAAATGCTATTGATAAGTTA
AATGGCATGCTTTATAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCG
TANGCAGGAAAGAGAACTGTAGCAATAAAACAAATTCATAACGTATTTGT
CAAAAACCTGCTGAGTCACTACGATGAAGATTGAAGAAATTTTTGGTGAG
TTGGAACAATACCATGCANTANTGATGAG
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