EY711187

Overview
NameEY711187
Unique NameEY711187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 47/138 (34.06%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATDGSGQSKGFGFVQFEN 669
            ++Y+G+LD  VTDS L++L  Q G V+++ + RD       G+G+  + +  D   A  +LN   L  K IR+  + +D  +      N+F+ NLD  +D + L+DTFS+ G ++   ++A D +G+SKG+GFV +++
Sbjct:   12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 50/141 (35.46%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY N  DA RA++ LN   L +K+I++ ++   PS       N++I  L +++  K + D F  FG+I++ ++  D  +G S+G  F++F+ ++
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRS 158          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 51/141 (36.17%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T  +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 204          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 51/141 (36.17%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY    DA RA+  LN   L +K+I++ Y+   PS       N++I  L +++  K + D FS FG I++ ++  D  +G S+G  F++F+ ++
Sbjct:   20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 50/141 (35.46%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY N  DA RA++ LN   L +K+I++  +   PS       N++I  L +++  K + D F  FG I++ ++  D  +G S+G  F++F+ ++
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRS 158          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 58/187 (31.02%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  157 EVVVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENK 672
            + VV    Q Q     +  +G   G++G+    T+L V  L   +T+ ++  LFS VG++ SV++ RD S               +SLGYG+VNY  P DA +A++VLN   L NK+I++ ++   PS       N+++  L K++  + L   F+ FG I++ +I  +     Q+KG GF++F+ +
Sbjct:  116 QAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR 300          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663
            ++AG    +    ++YVG LD  V++S L++L  Q G V+SV + +D  T    G+G+V +    DA  A+ +LN   L  K I++  +         G  NIF+ NLD  +D K L+DTFS+FG IL   KI  D  SG SKGF F+ F
Sbjct:    1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149          
The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SAP49_SCHPO2.473e-1934.06Spliceosome-associated protein 49 OS=Schizosacchar... [more]
ELV1B_XENLA2.473e-1935.46ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV2_XENLA2.473e-1936.17ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV1_MOUSE2.473e-1936.17ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
ELAV1_XENTR7.195e-1935.46ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
SF3B4_RAT9.397e-1938.67Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE9.397e-1938.67Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN9.397e-1938.67Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
ELAV_DROME9.397e-1931.02Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
SF3B4_CAEEL1.227e-1838.67Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bp
CACTGGTACACCTTCGGCACTATTCCGGAATTCCCTATCCGACCCACGCG
TCCGATAGAATCAGATTATCTTATCCTGTTATCTCTCTAGATTTTTATTT
GAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAG
GATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCA
AATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCC
TAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCG
CAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGT
TTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACT
ACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACT
CCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAG
TATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGT
CTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATT
CTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGG
TTTTGTGCAATTTGAGAACAAGAATCTGCTCAAATGCTATTGATAAGTTA
AATGGCATGCTTTATAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCG
TANGCAGGAAAGAGAACTGTAGCAATAAAACAAATTCATAACGTATTTGT
CAAAAACCTGCTGAGTCACTACGATGAAGATTGAAGAAATTTTTGGTGAG
TTGGAACAATACCATGCANTANTGATGAG
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