EY711187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19 Identity = 47/138 (34.06%), Postives = 82/138 (59.42%), Query Frame = 1 Query: 259 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATDGSGQSKGFGFVQFEN 669 ++Y+G+LD VTDS L++L Q G V+++ + RD G+G+ + + D A +LN L K IR+ + +D + N+F+ NLD +D + L+DTFS+ G ++ ++A D +G+SKG+GFV +++ Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19 Identity = 50/141 (35.46%), Postives = 84/141 (59.57%), Query Frame = 1 Query: 256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675 T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY N DA RA++ LN L +K+I++ ++ PS N++I L +++ K + D F FG+I++ ++ D +G S+G F++F+ ++ Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRS 158
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19 Identity = 51/141 (36.17%), Postives = 84/141 (59.57%), Query Frame = 1 Query: 256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 204
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19 Identity = 51/141 (36.17%), Postives = 82/141 (58.16%), Query Frame = 1 Query: 256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675 T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA+ LN L +K+I++ Y+ PS N++I L +++ K + D FS FG I++ ++ D +G S+G F++F+ ++ Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19 Identity = 50/141 (35.46%), Postives = 82/141 (58.16%), Query Frame = 1 Query: 256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675 T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY N DA RA++ LN L +K+I++ + PS N++I L +++ K + D F FG I++ ++ D +G S+G F++F+ ++ Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRS 158
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19 Identity = 58/187 (31.02%), Postives = 99/187 (52.94%), Query Frame = 1 Query: 157 EVVVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENK 672 + VV Q Q + +G G++G+ T+L V L +T+ ++ LFS VG++ SV++ RD S +SLGYG+VNY P DA +A++VLN L NK+I++ ++ PS N+++ L K++ + L F+ FG I++ +I + Q+KG GF++F+ + Sbjct: 116 QAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR 300
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.227e-18 Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 220 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQF 663 ++AG + ++YVG LD V++S L++L Q G V+SV + +D T G+G+V + DA A+ +LN L K I++ + G NIF+ NLD +D K L+DTFS+FG IL KI D SG SKGF F+ F Sbjct: 1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149 The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bpback to top |