EY711187

Overview
NameEY711187
Unique NameEY711187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.571e-18
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-----------LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKN 675
            T+L V  L  N+T  +L  LFS +G+V S ++ RD           LS   SLGYG+VNY N  DA RA++ LN   L +K+I++ ++   PS       N++I  L +++  K + D F  FG+I++ ++  D  +G S+G  F++F+ ++
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRS 169          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: MIP6_YEAST (RNA-binding protein MIP6 OS=Saccharomyces cerevisiae GN=MIP6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 50/153 (32.68%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  253 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL---DKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN----KNLLKCY 690
            T SL++G+L   VT+  L  +F +     S +VCRD  T++SLGYGY+N+ +  DA  A    N+T    + ++IM S ++   RK+   N+F  NL   +  +  ++ +     +GN+LSC +      + K  GFV F+N    +N++K Y
Sbjct:  110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSCLLE-----RRKNIGFVYFDNDISARNVIKKY 257          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 47/147 (31.97%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  235 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENK 672
            SG     T+L V  L  ++ D +LY LF  +G + + R+ RD  T  S GYG+V++ + ADA RA++ LN   + NK I++ ++   P   +    N+++ NL +SI  + L   F  +G I+   I  D  +G  +G  F++F  +
Sbjct:   71 SGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFAR--PGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKR 215          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15
Identity = 53/184 (28.80%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  211 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-----------------------------RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 217          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.659e-15
Identity = 53/184 (28.80%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  211 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-----------------------------RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +
Sbjct:   37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 217          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 47/169 (27.81%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  163 VVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            V ++Q         S PN  +   + +Q   T+LY+  L  + TD  L  L    G+++S +   D +T +  GYG+V++ +P+ A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L      FG ++S +I  D SG S+G GF + E+
Sbjct:   25 VSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMES 184          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.695e-15
Identity = 48/156 (30.77%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  205 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            S  N  ++  SG +Q   T+LY+  L  N TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L +    FG ++S +I  D SG S+G GF + E+
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 190          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS2_HUMAN (RNA-binding motif, single-stranded-interacting protein 2 OS=Homo sapiens GN=RBMS2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 48/169 (28.40%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  163 VVMAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            V +AQ         S PN  +     +Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +P+ A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L      FG ++S +I  D SG S+G GF + E+
Sbjct:   25 VSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMES 184          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 47/156 (30.13%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  205 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            S  N  ++  SG +Q   T+LY+  L  N TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L +    FG ++S ++  D SG S+G GF + E+
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMES 190          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 47/156 (30.13%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  205 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            S  N  ++  SG +Q   T+LY+  L  N TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG ++S ++  D SG S+G GF + E+
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMES 190          
The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
ELV1A_XENLA3.571e-1834.21ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
MIP6_YEAST6.735e-1732.68RNA-binding protein MIP6 OS=Saccharomyces cerevisi... [more]
SXL_MEGSC9.725e-1631.97Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
ELAV4_XENTR1.659e-1528.80ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA1.659e-1528.80ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
RBMS2_BOVIN3.695e-1527.81RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_BOVIN3.695e-1530.77RNA-binding motif, single-stranded-interacting pro... [more]
RBMS2_HUMAN4.826e-1528.40RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_RAT4.826e-1530.13RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_MOUSE6.303e-1530.13RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bp
CACTGGTACACCTTCGGCACTATTCCGGAATTCCCTATCCGACCCACGCG
TCCGATAGAATCAGATTATCTTATCCTGTTATCTCTCTAGATTTTTATTT
GAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAG
GATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCA
AATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCC
TAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCG
CAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGT
TTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACT
ACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACT
CCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAG
TATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGT
CTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATT
CTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGG
TTTTGTGCAATTTGAGAACAAGAATCTGCTCAAATGCTATTGATAAGTTA
AATGGCATGCTTTATAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCG
TANGCAGGAAAGAGAACTGTAGCAATAAAACAAATTCATAACGTATTTGT
CAAAAACCTGCTGAGTCACTACGATGAAGATTGAAGAAATTTTTGGTGAG
TTGGAACAATACCATGCANTANTGATGAG
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