EY711187

Overview
NameEY711187
Unique NameEY711187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 47/160 (29.38%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  217 GVAAGASGNQFL-------TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            G++ G+ G+  L        T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V++ +  D+ RA+ VLN   + NK +++ Y+   P        N+++ NL ++I    L   F  +G+I+   I  D  +G+ +G  FV++  +
Sbjct:  105 GLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 262          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 49/171 (28.65%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  169 MAQIQVQHQAQMSGPNGVAAGASGN----QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            +AQ       + S PN    G  G+    Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +P+ A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L      FG ++S +I  D SG S+G GF + E+
Sbjct:   25 VAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMES 186          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  205 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            S  N  +  +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+
Sbjct:   43 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMES 188          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 46/155 (29.68%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  205 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            S  N  +  +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+
Sbjct:   44 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMES 189          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 48/156 (30.77%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  208 GPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            G +G   G++G     T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V++A   D+ RA+  LN   + NK +++ Y+   P        N+++ NL ++I    L   F  +G I+   I  D  +G+ +G  FV+F  +
Sbjct:   99 GRDGHGGGSNG-----TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKR 247          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 47/156 (30.13%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  205 SGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            S  N  ++  SG +Q   T+LY+  L  + TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L  + +  +  +     +DP+       N++I NL  S+D + L +    FG ++S +I  D SG S+G GF + E+
Sbjct:   44 SNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 190          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 43/140 (30.71%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V++ +  D+ RA+ VLN   + NK +++ Y+   P        N+++ NL ++I    L   F  +G+I+   I  D  +G+ +G  FV++  +
Sbjct:  127 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 264          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 49/169 (28.99%), Postives = 81/169 (47.93%), Query Frame = 1
Query:  169 MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            MA  Q  +     G  G   G        T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V++A+  DA  A+  +N   + NK +++ Y+   P        N+++ NL ++I    L   F  +GNI+   I  D  +G+ +G  FV+F  +
Sbjct:   76 MAPAQSTNSLNSGGDGG---GGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKR 239          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 44/140 (31.43%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  256 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 672
            T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V++A+  DA  A+  LN   + NK +++ Y+   P        N+++ NL ++I    L   F  +GNI+   I  D  +G+ +G  FV+F  +
Sbjct:   85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKR 222          
BLAST of EY711187 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.128e-14
Identity = 44/149 (29.53%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  223 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 669
            ++ +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+
Sbjct:   45 SSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMES 184          
The following BLAST results are available for this feature:
BLAST of EY711187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
SXL_DROME8.233e-1529.38Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
RBMS2_MOUSE8.233e-1528.65RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_PONAB1.075e-1429.68RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_HUMAN1.075e-1429.68RNA-binding motif, single-stranded-interacting pro... [more]
SXL_CERCA1.404e-1430.77Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
RBMS1_HUMAN1.404e-1430.13RNA-binding motif, single-stranded-interacting pro... [more]
SXL_DROSU2.395e-1430.71Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
SXL_MUSDO3.128e-1428.99Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
SXL_CHRRU3.128e-1431.43Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
RBMS3_MOUSE3.128e-1429.53RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711187 ID=EY711187; Name=EY711187; organism=Citrus sinensis; type=EST; length=879bp
CACTGGTACACCTTCGGCACTATTCCGGAATTCCCTATCCGACCCACGCG
TCCGATAGAATCAGATTATCTTATCCTGTTATCTCTCTAGATTTTTATTT
GAGAACTAGCAAGAGAAGAGGGAAATAAAAAAGCCAAAAAAAAAAAGAAG
GATCTAGAAGTGGTAGTGATGGCACAGATTCAGGTGCAACATCAAGCGCA
AATGTCGGGGCCAAACGGAGTGGCGGCGGGTGCGTCAGGGAACCAGTTCC
TAACGACGTCTCTTTATGTTGGCGATCTCGATTTCAACGTGACCGATTCG
CAGCTTTATGATCTGTTCAGCCAGGTCGGTCAAGTTCTGTCGGTTAGGGT
TTGTCGGGACCTGAGCACCAGGCGCTCACTCGGCTATGGTTACGTTAACT
ACGCCAACCCTGCAGATGCGGCAAGGGCACTGGATGTTCTTAACTTCACT
CCACTTAATAATAAGTCCATTAGAATCATGTATTCCCATCGGGATCCTAG
TATTCGGAAAAGCGGTACTGGGAACATATTTATCAAGAATTTGGACAAGT
CTATTGATCACAAAGCATTACACGATACATTTTCTTCATTCGGAAACATT
CTTTCTTGTAAGATAGCTACTGATGGTTCTGGCCAGTCCAAAGGTTTCGG
TTTTGTGCAATTTGAGAACAAGAATCTGCTCAAATGCTATTGATAAGTTA
AATGGCATGCTTTATAATGATAAACAAGTGTTTGTTGGGCACTTTCTTCG
TANGCAGGAAAGAGAACTGTAGCAATAAAACAAATTCATAACGTATTTGT
CAAAAACCTGCTGAGTCACTACGATGAAGATTGAAGAAATTTTTGGTGAG
TTGGAACAATACCATGCANTANTGATGAG
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