EY711178

Overview
NameEY711178
Unique NameEY711178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8A_SCHPO (40S ribosomal protein S8-A OS=Schizosaccharomyces pombe GN=rps8a PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.163e-48
Identity = 104/211 (49.29%), Postives = 128/211 (60.66%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKEL 746
            MGI+RDS H                 +ELGRQP+NT++   K +  +RVRGGN K+RALRLD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G                           S HV RK   R  D  +D  +E QF AGRL A +SSRPGQ GR DGYILE  EL FY++ +
Sbjct:    1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG--------------SKGKKATSTPNPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.689e-48
Identity = 103/212 (48.58%), Postives = 133/212 (62.74%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQ 749
            MGISRDS H                 +ELGR  ANTK+ +++ VR +R RGGN K+RALRLD+GN+SW SE  TRKTRI+D +YNA+NNELVRT+TLVK AI+ VDAAPF+QWY  HY + + R                          S+H ++K  +RQK   +D  + EQF  GRLLA ISS PGQ G+A+GYILE  EL FY+++++
Sbjct:    1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHR-VRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLAR--------KKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIR 203          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 6.292e-48
Identity = 101/211 (47.87%), Postives = 126/211 (59.72%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKEL 746
            MGISRDS H                 +ELGRQPANTK+ + K +  +R RGGN K+RALR++TGN+SW SE +++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG  +G+                          S +  RK   R     ++  +E QF AGRL ACISSRPGQ GR DGYILE  EL FY++ L
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGK--------------KKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRL 196          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.123e-47
Identity = 105/213 (49.30%), Postives = 129/213 (60.56%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGISRDS H                 YELGR  +NTKL S + VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYGV++                            S  V   + K          + EQF +GRLLACISSRPGQCGR DGY+LE  EL FY + + +
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-RLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGVEL-----------------------EDPQASEKVAGLVPKT---------LLEQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDK 180          
BLAST of EY711178 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.950e-42
Identity = 95/218 (43.58%), Postives = 128/218 (58.72%), Query Frame = 3
Query:  114 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI-----GRXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEX*ELGFYMKELQR 752
            MGI R  +H                  ELGR PANT+L + + V  +R RGGN K RALRLDTGN++W SEA+  + R+LDVVYNA++NELVRT+TLVK+ IV VDAAPFK+WY +HYG+D+                                 S  + R+  +R+++  ++  I +Q   GR+LA I+SRPGQ GRADG +LE  EL FY+K L++
Sbjct:    1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARR-VSPVRARGGNFKIRALRLDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIADQLREGRVLARITSRPGQSGRADGILLEGAELQFYLKRLEK 217          
The following BLAST results are available for this feature:
BLAST of EY711178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8A_SCHPO2.163e-4849.2940S ribosomal protein S8-A OS=Schizosaccharomyces ... [more]
RS8_CAEEL3.689e-4848.5840S ribosomal protein S8 OS=Caenorhabditis elegans... [more]
RS8_YEAST6.292e-4847.8740S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_THEAN3.123e-4749.3040S ribosomal protein S8 OS=Theileria annulata GN=... [more]
RS8_LEIMA3.950e-4243.5840S ribosomal protein S8 OS=Leishmania major GN=RP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-G04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711178 ID=EY711178; Name=EY711178; organism=Citrus sinensis; type=EST; length=947bp
GTCCCCCTTGGCACCGTTCCGGAATTCTCTGCTCGACCACGCGTCCGAGC
GGGAGCATTGCGAGAGTACGTTACAGTGAGCAGCGCCGCAGCAGCAGCTA
CAGCTCAGCCAAGATGGGTATTTCCAGAGATTCAATGCATAAGAGACGCG
CCACTGGTGGCAAGAAGAAAGCTTGGAGGAAGAAGCGCAAGTACGAACTT
GGTCGTCAGCCTGCAAATACCAAGCTCTCTAGCAACAAGACTGTACGGAG
AATTCGTGTCAGAGGAGGCAATGTGAAGTGGAGGGCCCTGAGACTGGACA
CTGGGAACTATTCCTGGGGTAGCGAGGCTGTCACCCGCAAGACCCGTATC
CTGGATGTTGTTTACAATGCCTCTAATAATGAGCTCGTCAGGACTCAAAC
TCTGGTGAAGAGTGCCATTGTGCAAGTGGATGCAGCGCCTTTTAAGCAAT
GGTACCTTCAGCACTATGGCGTTGACATTGGTAGGAAGAAGAAGGCAGTT
ACCAAGAAGGAAACCACAGAGGAGGGAGAAGGTGCAGCAGCAGCAGCAGA
AGAAACTAAGAAGAGCAATCATGTTGTTAGGAAGCTTGAAAAGCGCCAGA
AGGACCGCACACTCGATCCTCACATTGAAGAGCAATTTGGTGCTGGTAGG
TTGTTGGCCTGCATTTCTTCACGGCCAGGTCAATGTGGCAGAGCTGATGG
GTACATACTAGAANGGTAGGAGCTGGGATTTTACATGAAAGAGCTCCAGA
GAAAGAAGGGCAAGGGTGCAGGAGCCGCTGCTAAAAATCATTATGCCCAT
GCGNCTGNNTTGATCTTATAGTGATTTTGTTGGTTTATGTATGGGAACCT
GACGGGCTACATTAAAGAACATGAGGGGGATATGTTTAGATTTTTTTTTT
TTTTATGAAAACTTCTTTACATGTAAGGNTTCCAATAGAAACCGGGA
back to top