EY711170

Overview
NameEY711170
Unique NameEY711170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711170 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.825e-16
Identity = 64/221 (28.96%), Postives = 105/221 (47.51%), Query Frame = 3
Query:  228 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFIHVYEKREG------------QNHLLLELAKVEFNTLQAIYXEET*DI 794
            PLD  E    +D ++RLG+ +HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ +  GE+IMEEA   T ++L+  +    + ++      +  + + AL+ P H  +P LEAR +I  Y   +              N   LELAK++FN +Q  + +E  DI
Sbjct:  331 PLDLFERLWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKLCTERYLRNALEDGGASDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIENYGPNDVWLGKTMYMMPNISNEKYLELAKLDFNRVQFFHRQELQDI 549          
BLAST of EY711170 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.883e-15
Identity = 63/221 (28.51%), Postives = 106/221 (47.96%), Query Frame = 3
Query:  228 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFIHVYEKREG------------QNHLLLELAKVEFNTLQAIYXEET*DI 794
            PLD  E    +D ++RLG+  HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ +  GE+IMEEA   T ++L+  +    + ++      +  + + AL+ P H  +P LEAR +I  Y   +              N   LELAK++FN +Q+++ +E  D+
Sbjct:  340 PLDLFERLWAVDTIERLGIDRHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKTCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHYGPNDVWLGKTMYMMPYISNEKYLELAKLDFNHVQSLHQKELRDL 558          
BLAST of EY711170 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.080e-15
Identity = 62/227 (27.31%), Postives = 106/227 (46.70%), Query Frame = 3
Query:  120 HDFLQSLNSNYTDETYKRRAEELK-GKVKTAIK-DVTEPLDQLELIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGF---ICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAEQAKRALELPLHWKVPMLEARWFIHVYEKREGQN-----HLLLELAKVEFNTLQAI 770
            H  + + +  + ++T    + EL   K+K  +  +V  P + LE+ID +Q LG   HF                 +N    +L+  +L FRLLRQ G+ V + +F    D K GF   + +D KG+  L EAS   +EGE  ++ A +FT   L E+     S ++     ++  ++L  P H  V  L ++ F  +  K  GQ        LL +A+++   L+++
Sbjct:   52 HASVSNPSKQFHNKTSLEYSHELNIKKIKNILSANVDVPSENLEMIDVIQSLGTDLHFRQGIEQTLHMIYKEGLQFNG---DLHEIALRFRLLRQEGHYVQESIFKNILDKKGGFKDVVKNDVKGLTELFEASELRVEGEETLDGAREFTYSRLNELCSGRESHQK-----QEIMKSLAQPRHKTVRGLTSKRFTSMI-KIAGQEDPEWLQSLLRVAEIDSIRLKSL 269          

HSP 2 Score: 28.1054 bits (61), Expect = 6.080e-15
Identity = 12/37 (32.43%), Postives = 23/37 (62.16%), Query Frame = 1
Query:  787 KTFQXWWKDTGLGREMSFAKNRVVASFLWSMGIAFEP 897
            +TF+ WW + GL +++  A+++ +    WSM I  +P
Sbjct:  276 QTFK-WWTELGLEKDVEKARSQPLKWHTWSMKILQDP 311          
BLAST of EY711170 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.130e-14
Identity = 62/221 (28.05%), Postives = 107/221 (48.42%), Query Frame = 3
Query:  228 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD--YNWRKEN----LYATSLEFRLLRQHGYPVSQEVFSGFKDDKVGFICDDFKG--------ILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVF---VAEQAKRALELPLHWKVPMLEARWFIHVYEKREG------------QNHLLLELAKVEFNTLQAIYXEET*DI 794
            PLD  E    +D ++RLG+ +HF+ E             +    W +EN    +  T++  R+LR HGY VS +V   F+D+   F C  F G        +L+++  S+ +  GE+IM+EA   T ++L+  +    + ++      +  + + AL+ P H  +P LEAR +I  Y   +              N   LELAK++FN +Q+++ +E  D+
Sbjct:  348 PLDLFERLWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPIPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFC--FLGQTQRGVTDMLNVNRCSHVAFPGETIMQEAKLCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHYGPNDVWLGKTMYMMPYISNLKYLELAKLDFNHVQSLHQKELRDL 566          
BLAST of EY711170 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 70/254 (27.56%), Postives = 116/254 (45.67%), Query Frame = 3
Query:   99 YQPSIWDHDFLQSLNSNYTDETYKRRA-EELKGKVKTAIKDVTEPLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKDYN--WRK----ENLYATSLEFRLLRQHGYPVSQEVFSGFKDDK-----VGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAE---QAKRALELPLHWKVPMLEARWFIH-------------VYEKREGQNHLLLELAKVEFNTLQA 767
            + PS     F+Q+ +SN  +  Y R A +   G V         P+D  E   ++D LQRLG++ +FE E             D    W +    +++  T++ FRLLRQHGY VS +VF  F+ +      VG       G+ +L+ AS  +   E I++ A +F+  +L E        ++ + + +   +   ALE+P +  +P +E R++I              +Y      N+  LELAK ++N  QA
Sbjct:  288 FSPSSTAFAFMQTRDSNCLE--YLRNAVKRFNGGVPNVF-----PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQA 534          
BLAST of EY711170 vs. ExPASy Swiss-Prot
Match: CPS1_ORYSJ (Ent-copalyl diphosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CPS1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 61/229 (26.64%), Postives = 101/229 (44.10%), Query Frame = 3
Query:  228 PLDQLE---LIDNLQRLGLAYHFEPEXXXXXXXXXXXXKD------YNWRKENLYATSLEFRLLRQHGYPVSQEVFSGFKDDK-----VGFICDDFKGILSLHEASYYSLEGESIMEEAWQFTSKHLKEMMITSNSKEEDVFVAE---QAKRALELPLHWKVPMLEARWFIHVYEKREG-------------QNHLLLELAKVEFNTLQAIYXEET*DISGXVEGYRSW 824
            P+D  E   ++D L+RLG++ +F+ E             +       N   + +  T++ FRLLR HGY VS  VF  F+ D      VG       G+ +L+ AS  S  GE I++ A  F+ + L+E        ++ +   +   + +  L+ P +  +P +EAR +I  Y   +               N   LELAK +FN  QA++  E       ++G + W
Sbjct:  366 PVDLFEHIWVVDRLERLGISRYFQREIEQNMDYVNRHWTEDGICWARNSNVKEVDDTAMAFRLLRLHGYNVSPSVFKNFEKDGEFFCFVGQSTQAVTGMYNLNRASQISFPGEDILQRARNFSYEFLREREAQGTLHDKWIISKDLPGEVQYTLDFPWYASLPRVEARTYIGQYGGNDDVWIGKTLYRMPIVNNATYLELAKQDFNRCQALHQHE-------LQGLQKW 587          
The following BLAST results are available for this feature:
BLAST of EY711170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
TPSD1_PINTA7.825e-1628.96Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TPSD1_PICAB3.883e-1528.51Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
LINS_ARATH6.080e-1527.31Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
TPSD2_PICAB1.130e-1428.05Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
KSA_ARATH3.635e-1327.56Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
CPS1_ORYSJ2.356e-1226.64Ent-copalyl diphosphate synthase 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-F06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711170 ID=EY711170; Name=EY711170; organism=Citrus sinensis; type=EST; length=910bp
CCACGCGTCCGATCAGAATCATGGCAAAAAATAAGCCAGTCCAATGCCTT
GTCAGCACCAAATATGATAATTTGACAGTTGATAGGAGATCAGCAAACTA
CCAACCTTCAATTTGGGACCATGATTTTTTGCAGTCACTGAATAGCAACT
ATACGGATGAAACATACAAAAGACGAGCAGAAGAGCTGAAGGGAAAAGTG
AAGACAGCGATTAAGGATGTAACCGAGCCTCTGGATCAGTTGGAGCTGAT
TGATAATTTGCAAAGACTTGGATTGGCTTATCATTTTGAGCCTGAGATTC
GGAACATATTGCGTAATATCCACAACCATAATAAAGATTATAATTGGAGA
AAAGAAAATCTGTATGCAACCTCCCTTGAATTCAGACTACTTAGACAACA
TGGCTATCCTGTTTCTCAAGAGGTTTTCAGTGGTTTTAAAGACGACAAGG
TAGGCTTCATTTGTGATGATTTCAAGGGAATACTGAGCTTGCATGAAGCC
TCGTATTACAGCTTAGAAGGAGAAAGCATCATGGAGGAGGCCTGGCAATT
CACCAGTAAGCATCTTAAAGAAATGATGATCACCAGCAACAGCAAGGAAG
AGGATGTATTTGTAGCAGAACAAGCGAAGCGGGCGCTGGAGCTCCCTCTG
CATTGGAAAGTGCCTATGTTAGAGGCAAGGTGGTTCATACACGTTTATGA
GAAAAGAGAGGGACAGAACCACCTTTTACTTGAGCTCGCTAAAGTGGAGT
TTAACACTTTGCAGGCAATTTACCANGAAGAAACTTAAGACATTTCAGGN
NTGGTGGAAGGATACAGGTCTTGGNAGAGAAATGAGCTTTGCGAAGAACA
GGGTGGTAGCGTCCTTCTTATGGAGCATGGGGATCGCGTTTGAGCCTAAA
TCGCCTACTG
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