EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.521e-48
Identity = 93/164 (56.71%), Postives = 117/164 (71.34%), Query Frame = 2
Query:   80 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPC 571
            D+R  F    Y+D++Y   L+H+   FSPLVEKCK+ G+A+RIG NHGSLS+R+   YG++  GMV SA E+A +C  +D+H+ +FSMK+SNP VMV AYR L  E+    W YPLHLGVTEAG G  G +KSA+GIGTLL +GLGDTIR SLT  P  EI  C
Sbjct:  120 DKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCKRLGKAMRIGVNHGSLSERVTQRYGNTIEGMVYSALEYAEVCVAMDYHDVIFSMKSSNPKVMVAAYRSLAYELDQREWSYPLHLGVTEAGSGTAGIVKSAVGIGTLLSEGLGDTIRCSLTGSPINEIPIC 283          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_PROMP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispG PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.024e-47
Identity = 96/165 (58.18%), Postives = 122/165 (73.94%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 598
            EYTD E++   + I + F+PLVE  K   +A+RIG NHGSLS+R++  YGD+P GM ESA EF +IC +LDFHN + SMKAS   VM+ AYR++   +   G++YPLHLGVTEAG+G+ GR+KS  GIGTLL +GLGDTIRVSLTE PEKEI  C   L +LG+R
Sbjct:  141 EYTDTEFETIKKTILKRFTPLVEVLKSENKALRIGVNHGSLSERMLFTYGDTPLGMTESAMEFVKICDELDFHNIIISMKASRAPVMLAAYRMIADRLDAEGYNYPLHLGVTEAGDGDYGRIKSTAGIGTLLAEGLGDTIRVSLTEAPEKEIPVCYSILQSLGLR 305          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.338e-47
Identity = 99/182 (54.40%), Postives = 124/182 (68.13%), Query Frame = 2
Query:   86 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            +A  ++  YT+ E+    + I E   PLV   +  G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC+ LDFHN + SMKAS   VM+ AYRL+   M   G DYPLHLGVTEAG+GE GR+KS  GIGTLL +G+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  133 QASGDRTGYTEAEFAAIGEKIRETLEPLVVSLRDQGKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICQSLDFHNLIISMKASRVPVMLAAYRLMAKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIGTLLAEGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 314          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9605) GN=ispG PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.747e-47
Identity = 97/175 (55.43%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            E++ +E+    Q I E F PLV   +   +A+RIG NHGSL++R++  YGD+P GMVESA EF RIC +LDFHN L SMKAS   VM+ AYRL+   M   G++YPLHLGVTEAG+G+ GR+KS  GI TLL DGLGDT+RVSLTE PEKEI  C   L +LG+R   ++    P
Sbjct:  133 EFSPEEFAAIGQRIRETFEPLVTLLRDQNKALRIGVNHGSLAERMLFTYGDTPEGMVESAMEFVRICHELDFHNILISMKASRAPVMLAAYRLMADTMDKEGFNYPLHLGVTEAGDGDYGRIKSTAGIATLLADGLGDTLRVSLTEAPEKEIPVCYSILQSLGLRKTMVEYVACP 307          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.981e-47
Identity = 96/175 (54.86%), Postives = 124/175 (70.86%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            E+T+ E+ +    I E F PLV+  ++  +A+RIG NHGSL++R++  YGD+P+GMVESA EF RIC  LDFHN + SMKAS   VM+ AYRL+   M   G++YPLHLGVTEAG+G+ GR+KS  GI TLL +GLGDTIRVSLTE PEKEI  C   L +LG+R   ++    P
Sbjct:  133 EFTESEFAEIGTRIRETFEPLVKLLREQNKALRIGVNHGSLAERMLFTYGDTPKGMVESAMEFVRICDDLDFHNIVISMKASRAPVMLSAYRLMADTMDQEGFNYPLHLGVTEAGDGDYGRIKSTAGIATLLAEGLGDTIRVSLTEAPEKEIPVCYSILQSLGLRKTMVEYIACP 307          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.084e-47
Identity = 97/175 (55.43%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            EYT  E+++  + I +   PLV   +  G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDF+N + S+KAS   VM+ AYRL+V  M   G DYPLHLGVTEAG+GE GR+KS  GIGTLL +G+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  140 EYTQAEFEEIGEKIRQTLEPLVISLRDQGKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFYNIVISLKASRVPVMLAAYRLMVKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIGTLLAEGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 314          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.084e-47
Identity = 99/175 (56.57%), Postives = 120/175 (68.57%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            EYT  E+++  + I E  +PLV   +  G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDF N + SMKAS   VMV AYRL+   M   G DYPLHLGVTEAG+GE GR+KS  GI TLL DG+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  144 EYTQAEFEEIGEKIRETLAPLVITLRDQGKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNIVISMKASRVPVMVAAYRLMAKRMDDLGMDYPLHLGVTEAGDGEYGRIKSTAGIATLLADGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 318          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.084e-47
Identity = 99/175 (56.57%), Postives = 120/175 (68.57%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            EYT  E+++  + I E  +PLV   +  G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDF N + SMKAS   VMV AYRL+   M   G DYPLHLGVTEAG+GE GR+KS  GI TLL DG+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  144 EYTQAEFEEIGEKIRETLAPLVITLRDQGKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNIVISMKASRVPVMVAAYRLMAKRMDDLGMDYPLHLGVTEAGDGEYGRIKSTAGIATLLADGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 318          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.673e-47
Identity = 96/175 (54.86%), Postives = 122/175 (69.71%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            E++D E+      I E F PLV   +   +A+RIG NHGSL++R++  YGD+P+GMVESA EF RIC +LDFHN + SMKAS   VM+ AYRL+   M   G++YPLHLGVTEAG+G+ GR+KS  GI TLL DGLGDTIRVSLTE PE+EI  C   L +LG+R   ++    P
Sbjct:  133 EFSDKEFAAIGARIHETFEPLVTLLRDQNKALRIGVNHGSLAERMLFTYGDTPKGMVESAMEFVRICDELDFHNIVISMKASRAPVMLAAYRLMADTMDKEGFNYPLHLGVTEAGDGDYGRVKSTAGIATLLADGLGDTIRVSLTEAPEREIPVCYSILQSLGLRKTMVEYVACP 307          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=ispG PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.673e-47
Identity = 97/178 (54.49%), Postives = 124/178 (69.66%), Query Frame = 2
Query:   98 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            ++ EYT  E+++  + I E   PLV   K+  +A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  L+F+N + S+KAS   VM+ AYRL+V  M   G DYPLHLGVTEAG+GE GR+KS  GIGTLL +G+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  139 DRTEYTPTEFEEIGEKIRETLKPLVLTLKEQDKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLEFYNIVISLKASRVPVMLAAYRLMVKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIGTLLAEGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 316          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_CHLT23.521e-4856.714-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMP1.024e-4758.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP21.338e-4754.404-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNSC1.747e-4755.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS92.981e-4754.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA55.084e-4755.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT5.084e-4756.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANASP5.084e-4756.574-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX8.673e-4754.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP78.673e-4754.494-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
back to top