EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9311) GN=ispG PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.479e-46
Identity = 95/178 (53.37%), Postives = 126/178 (70.79%), Query Frame = 2
Query:   98 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPC-RRLANLGMRAAELQKGVAP 628
            ++ E++ +E+      I+E F+PLV+  K+  +A+RIG NHGSL++R++  YGD+P+GMVESA EF RIC  LDFHN + SMKAS   VM+ AYRL+   M   G++YPLHLGVTEAG+G+ GR+KS  GI TLL +GLGDT+RVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  130 DRQEFSKEEFDAIGDRIKETFAPLVQVLKEQNKALRIGVNHGSLAERMLFTYGDTPQGMVESAMEFVRICDSLDFHNIVISMKASRAPVMLAAYRLMADTMDREGFNYPLHLGVTEAGDGDYGRIKSTAGIATLLAEGLGDTLRVSLTEAPEKEIPVCFSILQALGIRKTMVEYVACP 307          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_PROMM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispG PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.523e-46
Identity = 95/172 (55.23%), Postives = 123/172 (71.51%), Query Frame = 2
Query:   86 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 598
            +A  ++ E++ +E     + I E F PLV + K+  +A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDFHN + SMKAS   VM+ AYRL+   M   G++YPLHLGVTEAG+G+ GR+KS  GI TLL +GLGDTIRVSLTE PEKEI  C   L ++G+R
Sbjct:  134 KADPDRTEFSGEEIASIRERIAENFEPLVTRLKQQDKALRIGVNHGSLAERMLFAYGDTPLGMVESAMEFVRICDSLDFHNIVISMKASRAPVMLAAYRLMADTMDQEGFNYPLHLGVTEAGDGDYGRIKSTAGIATLLAEGLGDTIRVSLTEAPEKEIPVCYSILQSIGLR 305          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_NOSP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispG PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.523e-46
Identity = 97/175 (55.43%), Postives = 117/175 (66.86%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            EYT  E+ +    I E   PLV   +  G+++RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDF N + SMKAS   VM+ AYRL+   M   G DYPLHLGVTEAG+GE GR+KS  GI TLL DG+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  144 EYTQSEFDEIGDKIRETLEPLVVSLRDQGKSMRIGVNHGSLAERMLFTYGDTPEGMVESAIEFIRICESLDFRNLVISMKASRVPVMLAAYRLIAKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIATLLADGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 318          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=ispG PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.523e-46
Identity = 97/175 (55.43%), Postives = 119/175 (68.00%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            EYT  E+ +  + I E   PLV   +  G+A+RIG NHGSL++R++  YGD+P GMVESA EF RIC  LDF N + S+KAS   VM+ AYRL+V  M   G DYPLHLGVTEAG+GE GR+KS  GI TLL +G+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  142 EYTQAEFDEIGEKISETLKPLVVSLRDQGKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICESLDFRNLVISLKASRVPVMLAAYRLMVKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIATLLAEGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 316          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. GN=ispG PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.296e-46
Identity = 91/152 (59.87%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            EYT  E++     I E F+PLV+  K   +A+RIG NHGSL++R++  YGD+P GMVESA EFA+IC + DFHN + S KAS P VM+ AYRL        G +YP HLGVTEAG+GE GR+KSA+GIGTLL +G+GDTIRVSLTE PEKEI
Sbjct:  141 EYTQAEFEAIRNKIRETFTPLVQTLKAQNKALRIGVNHGSLAERMLFTYGDTPEGMVESALEFAQICAEQDFHNVVLSFKASRPQVMLAAYRLAARRFDALGLNYPFHLGVTEAGDGEYGRIKSAVGIGTLLAEGIGDTIRVSLTEAPEKEI 292          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNY3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=ispG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.621e-46
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  110 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            Y+D E+ +  + I E   PLV   +  G+++RIG NHGSLS+R++  YGD+P GMV+SA EF +IC  LDF N + SMKAS   VM+ AYRL+V  M   G DYPLHLGVTEAG+GE GR+KS  GI TLL DG+GDTIRVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  140 YSDQEFAEIGEKIRETLEPLVISLRDQGKSMRIGVNHGSLSERMLFTYGDTPEGMVQSALEFIKICESLDFRNLVVSMKASRVPVMLAAYRLMVKRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIATLLADGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 313          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ACAM1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.342e-46
Identity = 95/182 (52.20%), Postives = 123/182 (67.58%), Query Frame = 2
Query:   86 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            +A+ ++ E++  E++     I E   PLV   +   +A+RIG NHGSL++R++  YGD+P GMVESA EF RIC+ LDF+N + SMKAS   VM+ AYRL+   M   G DYPLHLGVTEAG+GE GR+KS  GI TLL DG+GDT+RVSLTE PEKEI  C   L  LG+R   ++    P
Sbjct:  136 KAKDDRTEFSQSEFENIGDKIRETLEPLVVSLRDQNKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICQSLDFNNLVISMKASRVPVMLAAYRLMARRMDELGMDYPLHLGVTEAGDGEYGRIKSTAGIATLLADGIGDTLRVSLTESPEKEIPVCYSILQALGLRKTMVEYVACP 317          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP6 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispG PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.136e-45
Identity = 91/174 (52.30%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  110 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            YT +E+++  + I +   PLV   ++  +A+RIG NHGSL++R++  YGD+P GMVESA EF R+C ++DF N + SMKAS   VM+ AYRL+   M   G DYPLHLGVTEAG+G+ GR+KS +GIGTLL +G+GDTIRVSLTE PE EI  C   L  LG+R   ++    P
Sbjct:  140 YTPEEFERIGKQIRDTLEPLVTSLREQDKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFLRLCEEMDFRNLVISMKASRAPVMMAAYRLMAKRMDDLGMDYPLHLGVTEAGDGDYGRIKSTVGIGTLLAEGIGDTIRVSLTEAPENEIPVCYSILQALGLRKTMVEYVACP 313          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispG PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.136e-45
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 2
Query:  107 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            EYT  E +     I E F+PLV+  K   +A+RIG NHGSL++R++  YGD+P GMVESA E+A IC + DFHN + S KAS P VM+ AYRL        G +YP HLGVTEAG+GE GR+KSA+GIGTLL +G+GDTIRVSLTE PEKEI
Sbjct:  141 EYTQAELEAIRNKIRETFTPLVQTLKAQNKALRIGVNHGSLAERMLFMYGDTPEGMVESALEYAEICAEQDFHNVVLSFKASRPQVMLAAYRLAARRFDALGLNYPFHLGVTEAGDGEYGRIKSAVGIGTLLAEGIGDTIRVSLTEAPEKEI 292          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYNE7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispG PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.136e-45
Identity = 91/174 (52.30%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  110 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            YT +E+++  + I +   PLV   ++  +A+RIG NHGSL++R++  YGD+P GMVESA EF R+C ++DF N + SMKAS   VM+ AYRL+   M   G DYPLHLGVTEAG+G+ GR+KS +GIGTLL +G+GDTIRVSLTE PE EI  C   L  LG+R   ++    P
Sbjct:  140 YTPEEFERIGKQIRDTLEPLVTSLREQDKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFLRLCEEMDFRNLVISMKASRAPVMMAAYRLMAKRMDDLGMDYPLHLGVTEAGDGDYGRIKSTVGIGTLLAEGIGDTIRVSLTEAPENEIPVCYSILQALGLRKTMVEYVACP 313          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_SYNS31.479e-4653.374-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMM2.523e-4655.234-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOSP72.523e-4655.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP82.523e-4655.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJB3.296e-4659.874-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNY35.621e-4655.174-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACAM17.342e-4652.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP62.136e-4552.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJA2.136e-4559.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNE72.136e-4552.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
back to top