EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_WOLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 55/181 (30.39%), Postives = 80/181 (44.20%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP--------------RGMVESAFEFARICRK--LDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT----EPPEKEIDPCRR-LANLGMRAAELQKGVAP 628
            +E F  ++E    +   VRIG N GSL   ++    D                + +V SA   A+   +  L     + S K S    ++  Y  L         +Y LHLG+TEAG G  G + +  G+  LLQ+G+GDTIR SLT    EP   E+  C+  L ++G+R    Q    P
Sbjct:  149 DEKFERVIEYAITHDIPVRIGVNWGSLDKYLLQKLMDENSLSNNPKSSDVILRKALVMSALNSAQKAEEIGLSLDKIVISCKVSRVQDLISVYTALAKSS-----NYALHLGLTEAGTGNKGMISTTAGLTYLLQNGIGDTIRASLTQRPGEPRVNEVAVCQEILQSIGLRHFNPQVNSCP 324          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_WOLWR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 55/181 (30.39%), Postives = 83/181 (45.86%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP--------------RGMVESAFEFARICRK--LDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPP----EKEIDPCRR-LANLGMRAAELQKGVAP 628
            +E F  ++E    +   VRIG N GSL   ++    D                + +V SA + A+      L+ +  + S K S    ++  Y  L         +Y LHLG+TEAG G  G + +A G+  LLQ+G+GDTIR SLT+ P      E+  C+  L ++G+R    Q    P
Sbjct:  146 DEKFERVIEYAIMHDLPVRIGVNWGSLDKYLLQKLMDENSSLSNSRPSDVILRKALVMSALDSAKKAEGIGLNSNKIIISCKVSKVQDLILVYMALAKSS-----NYALHLGLTEAGMGNKGVVNTAAGLTYLLQNGIGDTIRASLTQRPGESRTNEVVVCQEILQSIGLRYFNPQVNSCP 321          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_AGRRK (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD------SPRG--------MVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPP 550
            ++ F+ ++E   +Y + VRIG N GSL   +++   D      SP          +V+SA   A +  ++    +  + S K S    ++  Y +L         ++ LHLG+TEAG G  G + S+  +G +LQ G+GDT+RVSLT  P
Sbjct:  130 DKQFAEIIEMAIRYDKPVRIGVNWGSLDQDLLTALMDQNSAAGSPLSARQVTRETIVQSALISADLAEEIGLPRNRIILSAKVSQVQDLIAVYSMLSERS-----NHALHLGLTEAGMGSKGIVASSAAMGYVLQHGIGDTVRVSLTPEP 274          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_RHIEC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD------SP--------RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPP 550
            ++ F+ ++E   +Y + VRIG N GSL   +++   D      SP          +V+SA   A +  ++    +  + S K S    ++ A   ++AE   H     LHLG+TEAG G  G + S+  +G +LQ G+GDTIRVSLT  P
Sbjct:  130 DKQFAEIIEMAIRYDKPVRIGVNWGSLDQDLLTALMDENAAAGSPLSARQVTREAIVQSALLSAALAEEIGLPRNRIILSAKVSQVQDLI-AVNSMLAERSNHA----LHLGLTEAGMGSKGIVASSAAMGFVLQHGIGDTIRVSLTPEP 274          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_EHRCJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Ehrlichia canis (strain Jake) GN=ispG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 56/178 (31.46%), Postives = 84/178 (47.19%), Query Frame = 2
Query:  158 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY--------------YGDSPRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK----EIDPCRR-LANLGMRAAELQKGVAP 628
            F  ++E   KY   +RIG N GSL   + S               Y    + +V SA   A+   ++    +  + S K S    ++  Y +L      +  +YPLHLG+TEAG G  G + S  GI  LL +G+GDTIRVSLT+ P +    E+  C+  L ++G++    Q    P
Sbjct:  145 FEDVIEFAIKYDIPIRIGVNWGSLDKYLASKLMNDNALLSNPKPDYIVLQKALVISAVTSAKRAEEIGLSKNKIVISCKTSKIQDLIPVYTVLS-----NVCNYPLHLGLTEAGSGIKGVVGSVAGISYLLLNGIGDTIRVSLTQQPGESRTTEVKLCQEILQSIGLKNFNAQVTSCP 317          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_WOLTR4.496e-1130.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_WOLWR5.872e-1130.394-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AGRRK5.872e-1131.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHIEC7.668e-1133.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_EHRCJ7.668e-1131.464-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
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