EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_FUSNN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.207e-25
Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 580
            +E    +VE  K+    +RIG N GS+   I+  YG      +VESA    R+  K DF + + S+K+SN  +MV+AYR + + +     DYPLHLGVTEAG    G +KSAIGIG LL DG+GDT+RVSLTE P +EI   + +
Sbjct:  108 DENVKKVVEAAKEKNIPIRIGVNSGSIEKEILEKYGKPCVDALVESAMYHIRLLEKFDFFDIIVSLKSSNVKMMVEAYRKISSLV-----DYPLHLGVTEAGTKFQGTVKSAIGIGALLVDGIGDTLRVSLTENPVEEIKVAKEI 247          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_FRASC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.207e-25
Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQKGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEEDYRGAL 727
            ++  ++    +    K  G  +RIG N GSL  R+++ YG + P  + ESA     +  + DF +   S+K  +PVVM+QAYRLL         DYPLHLGVTEAG    G +KSA+  G LL +G+GDTIRVSL+ PP +E+      L +LG+R  +L+  +       R   D    + Q+    EG E   R A+
Sbjct:  121 IKAFDDKVGEIARAAKAAGVPIRIGVNAGSLDKRLLAKYGKATPEALTESALWECSLFEEHDFRDIKISVKHHDPVVMIQAYRLLA-----QACDYPLHLGVTEAGPSFQGTVKSAVAFGALLAEGIGDTIRVSLSAPPVEEVKVGTAILESLGLRQRKLE--IVSCPSCGRAQVDVYTLANQVSAGLEGMEVPLRVAV 312          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_TROWT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Tropheryma whipplei (strain Twist) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.188e-25
Identity = 66/161 (40.99%), Postives = 96/161 (59.63%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQ 613
            ++  ++    + EK K  G ++RIG N GSL  R++  YG  + + +V+SA   A +  + DFH+F  S+K  +PV MV+AYRLL         D+PLHLGVTEAG    G +KS+     LL +G+GDTIRVSL+ PP +E+      L +LG+R   L+
Sbjct:  120 IRKFDDQIGKIAEKAKAAGVSIRIGVNAGSLDPRLLEKYGRPTAQALVDSAVWEAGLFEEYDFHDFKISVKHHDPVTMVKAYRLLAER-----GDWPLHLGVTEAGPAFQGTIKSSTAFAVLLAEGIGDTIRVSLSAPPVEEVKVGLEILRSLGLRERRLE 275          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_TROW8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Tropheryma whipplei (strain TW08/27) GN=ispG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.188e-25
Identity = 66/161 (40.99%), Postives = 96/161 (59.63%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQ 613
            ++  ++    + EK K  G ++RIG N GSL  R++  YG  + + +V+SA   A +  + DFH+F  S+K  +PV MV+AYRLL         D+PLHLGVTEAG    G +KS+     LL +G+GDTIRVSL+ PP +E+      L +LG+R   L+
Sbjct:  120 IRKFDDQIGKIAEKAKAAGVSIRIGVNAGSLDPRLLEKYGRPTAQALVDSAVWEAGLFEEYDFHDFKISVKHHDPVTMVKAYRLLAER-----GDWPLHLGVTEAGPAFQGTIKSSTAFAVLLAEGIGDTIRVSLSAPPVEEVKVGLEILRSLGLRERRLE 275          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_PSEHT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.144e-25
Identity = 63/139 (45.32%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            EE    +V+  +++   +RIG N GSL   +   YG+ SP  ++ESA     I R+LDF  F  S+KAS+  + V AYRLL  E+     D PLHLG+TEAG    G +KSA+G+G LL +G+GDT+RVSL   P +EI
Sbjct:  115 EERIRAVVDAAREHNIPIRIGVNGGSLERDLQEKYGEPSPEALLESAMRHVNILRRLDFDQFKISVKASDVFLAVGAYRLLAKEI-----DQPLHLGITEAGGMRSGSVKSAVGLGMLLAEGIGDTLRVSLAADPVQEI 248          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_RHORT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +V   K +G ++RIG N GSL   ++  YG+  P  MVESA   ARI    DF  F  S+KAS+  + V AY+ L         DYPLHLG+TEAG    G +KSAIGIG++L  G+GDTIRVSL+  PE+E+
Sbjct:  123 VVRAAKDHGCSMRIGVNAGSLEKELLEKYGEPCPEAMVESALSHARILEDNDFTEFKISVKASDAFLAVAAYKALA-----EACDYPLHLGITEAGGLRGGTVKSAIGIGSMLWAGIGDTIRVSLSAQPEEEV 250          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_KOCRD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 65/143 (45.45%), Postives = 91/143 (63.64%), Query Frame = 2
Query:  191 GRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            G ++RIG N GSL  R++  YG + P  ++ESA   A +  + DFH+F  S+K ++PV MV+AY+LL         D+PLHLGVTEAG    G +KSA   G LL  G+GDTIRVSL+ PP +E+    + L +LG+R  +L+
Sbjct:  140 GVSIRIGVNAGSLDKRLLEKYGKATPEALMESAVWEASLFEQHDFHDFKISVKHNDPVTMVRAYQLLAER-----GDWPLHLGVTEAGPALQGTVKSATAFGILLSQGIGDTIRVSLSAPPVEEVKVGNQILQSLGLRPRKLE 277          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_FRAAA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispG PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.331e-25
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQKGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEEDYRGAL 727
            ++  ++    +    K  G  +RIG N GSL  R+++ YG + P  + ESA     +  + DF +   S+K  +PVVM+QAYRLL         DYPLHLGVTEAG    G +KS++  G LL +G+GDTIRVSL+ PP +E+      L +LG+R  +L+  +       R   D    + Q+    EG E   R A+
Sbjct:  121 IKAFDDKVGEIARAAKGAGIPIRIGVNAGSLDKRLLAKYGKATPEALTESALWECSLFEEHDFRDIKISVKHHDPVVMIQAYRLLAQSC-----DYPLHLGVTEAGPAFQGTVKSSVAFGALLAEGIGDTIRVSLSAPPVEEVKVGTAILESLGLRQRKLE--IVSCPSCGRAQVDVYTLANQVSAGLEGMEVPLRVAV 312          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_SYMTH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Symbiobacterium thermophilum GN=ispG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.219e-24
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  146 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +EEV    V  CK  G  +RIG N GSL +  +  YG  +  GMVESA +   I  +LDFH+ + S+K+S    M++AYR L  ++     DYPLH+GVTEAG    G +KSA+GIGT+L +G+GDTIRVSL+    +E+
Sbjct:  113 VEEV----VRACKDRGVPIRIGVNAGSLEEEFLEKYGYPTADGMVESALKHVAILEELDFHDIVISIKSSRVDQMIEAYRKLSEKV-----DYPLHVGVTEAGTPFAGTIKSAVGIGTILAEGIGDTIRVSLSTDCVEEV 243          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_RHOOB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.592e-24
Identity = 71/162 (43.83%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQ 613
            +I+E    + E  K  G A   +RIG N GSL  R+M  YG + P  +VESA   A +  +  F +   S+K ++PV+MV+AYR L A+      DYPLHLGVTEAG    G +KSA+  G LL +G+GDTIRVSL+ PP +EI    + L +L +R  +L+
Sbjct:  122 NIKEFDGRVKEVAKAAGDAGIPIRIGVNAGSLDPRLMQKYGKATPEALVESALWEAGLFEEHGFGDIKISVKHNDPVIMVEAYRQLAAQC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLAEGIGDTIRVSLSAPPAEEIKVGTQILQSLNLRPRKLE 278          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_FUSNN3.207e-2545.524-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_FRASC3.207e-2537.194-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TROWT4.188e-2540.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TROW84.188e-2540.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEHT7.144e-2545.324-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHORT9.331e-2548.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_KOCRD9.331e-2545.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_FRAAA9.331e-2536.684-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYMTH1.219e-2446.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_RHOOB1.592e-2443.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
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