EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_GRABC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.592e-24
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +V+  + +G A+RIG N GSL   ++  YG+ +P  +VESA E A+I +  DFH F  S+KAS+  + V AY+ L AE+     D+PLH+G+TEAG    G +KSAIG+G LL  G+GDT+RVSL+  PE+E+
Sbjct:  123 VVKAARDHGCAIRIGVNAGSLERHLLEKYGEPNPDALVESALEHAKILQDHDFHEFKISVKASDVFLAVAAYQQL-AEVC----DHPLHIGITEAGGRRTGTVKSAIGLGNLLWAGVGDTMRVSLSAEPEEEV 250          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_GEOTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.592e-24
Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  152 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 580
            E    +V+  K+ G  +RIG N GSL  RI+  YG  +  GMVESA    RI  +LDFH+ + S+KAS+  + ++AY     E     +DYPLH+G+TEAG    G +KSA+G+G +L  G+G+TIR+SL+  P +E+   R +
Sbjct:  114 EKVEAVVKAAKERGVPIRIGVNAGSLEKRILEKYGYPTAEGMVESALYHIRILEELDFHDIIVSLKASDVRLAIEAY-----EKAARTFDYPLHVGITEAGTLFSGTIKSAVGLGAILSKGIGNTIRISLSADPVEEVKVAREI 252          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_BREBN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ispG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.592e-24
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 580
            +VE C++    +RIG N GS+  R++  YG  SP  +VESA +  +I   L++ N + S+K+S+   M+Q Y L+  +      +YPLH+GVTEAG    G +KS++GIGT+L  G+GDTIRVSLT  P +EI   +++
Sbjct:  116 VVEACRERNVPIRIGVNSGSVEKRLLDKYGYPSPEAIVESAMDHVQILEDLNYDNIVISLKSSDVPTMIQTYSLMAQKR-----NYPLHVGVTEAGTQFSGSIKSSVGIGTVLSMGIGDTIRVSLTADPVEEIKVAKQI 249          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_HELPY (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Helicobacter pylori GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.079e-24
Identity = 64/153 (41.83%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAE 607
            +E    +V+ CK+    +RIG N GSL  +    YG +P+GMVESA   A++   LDF NF  S+KAS+ +  ++AYR+L   +      YP HLGVTEAG      +KSA+ +G LL +G+GDT+RVS+T   E EI   R +     R  E
Sbjct:  110 KEKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTNFKISLKASDVIRTIEAYRMLRPLVI-----YPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELENEIKVARAILRHSGRLKE 257          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_GEOKA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Geobacillus kaustophilus GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.079e-24
Identity = 62/144 (43.06%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  152 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 580
            E    +V+  K+ G  +RIG N GSL  RI+  YG  +  GMVESA    RI  +LDFH+ + S+KAS+  + ++AY     E     +DYPLH+G+TEAG    G +KSA+G+G +L  G+G+TIRVSL+  P +E+   R +
Sbjct:  114 EKVEAVVKAAKERGVPIRIGVNAGSLEKRILEKYGYPTADGMVESALYHIRILEELDFHDIIVSLKASDVRLAIEAY-----EKAARTFDYPLHVGITEAGTLFSGTIKSAVGLGAILSKGIGNTIRVSLSADPVEEVKVAREI 252          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CAUCR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Caulobacter crescentus GN=ispG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.079e-24
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +++  + +G ++RIG N GSL   ++  YG+  P  MVESA   ARI +  DFH F  S+KAS+P + V AY  L   +     D PLHLGVTEAG    G +KSAIGIG +L  G+GDTIRVSL   P +EI
Sbjct:  128 VIQAARDHGCSMRIGVNAGSLERELLEKYGEPCPDAMVESALNHARILQDHDFHEFKISVKASDPFMTVAAYYQLAEAI-----DCPLHLGVTEAGATRTGTVKSAIGIGAMLWAGIGDTIRVSLAADPVEEI 255          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_GLUOX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Gluconobacter oxydans GN=ispG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.715e-24
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +V   + YG ++RIG N GSL   ++  YG+ +P  +VESA E A+I    DFH F  S+KAS+  + V AY+ L         D+PLH+G+TEAG    G +KS+IG+G LL  G+GDT+RVSL+  PE+E+
Sbjct:  124 VVNAARDYGCSIRIGVNAGSLEKHLLEKYGEPNPEALVESALEHAKILEDHDFHEFKISVKASDVFMAVAAYQQLA-----DCCDHPLHIGITEAGSKRAGTVKSSIGLGNLLWAGVGDTMRVSLSAAPEEEV 251          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_GLUDA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.715e-24
Identity = 61/133 (45.86%), Postives = 91/133 (68.42%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +V+  +++G ++RIG N GSL   ++  YG+ +P  +VESA E A+I +  DFH F  S+KAS+  + V AY+ L AE+     D+PLH+G+TEAG    G +KS+IG+G LL  G+GDT+RVSL+  PE+E+
Sbjct:  124 VVKAAREHGCSIRIGVNAGSLEKHLLEKYGEPNPDALVESALEHAKILQDHDFHEFKISVKASDVFLAVAAYQQL-AEVC----DHPLHIGITEAGSKRAGTVKSSIGLGNLLWAGVGDTMRVSLSADPEEEV 251          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CLOTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Clostridium tetani GN=ispG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.715e-24
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAEL-QKGV 622
            EE  + + +K K+ G  +RIG N GSL   I++ YG      +VESA     I  K+DFH+ + S+K+SN   M+++Y+ + +++     +YPLHLGVTEAG    G +KS++GIGTLL  G+GDTIRVSLT  P +EI   + +    +RA  L  KGV
Sbjct:  109 EEKVNLVSKKAKEKGIPIRIGVNSGSLEKDILNKYGGVCSDALVESALRHVEILNKVDFHDIVISIKSSNVNQMIESYKKISSKV-----NYPLHLGVTEAGTPWRGIIKSSVGIGTLLSQGIGDTIRVSLTGDPIEEIKAGKEI----LRALNLYSKGV 259          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ARTS2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter sp. (strain FB24) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.715e-24
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            ++  ++    +    K +G ++RIG N GSL   I+  YG + P  +VESA   A +  +  FH+F  S+K ++PV+MV AY     EM     D+PLHLGVTEAG    G +KSA   G LL  G+GDTIRVSL+ PP +EI    + L +L +R  +L+
Sbjct:  122 IRKFDDQVKEIARAAKDHGTSIRIGVNAGSLEPGILKKYGKATPEALVESAVWEASLFEEHGFHDFKISVKHNDPVIMVAAY-----EMLAEKGDWPLHLGVTEAGPAFQGTIKSATAFGALLSRGIGDTIRVSLSAPPVEEIKVGNQILQSLNLRPRKLE 277          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_GRABC1.592e-2447.374-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GEOTN1.592e-2442.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BREBN1.592e-2442.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_HELPY2.079e-2441.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GEOKA2.079e-2443.064-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CAUCR2.079e-2448.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GLUOX2.715e-2445.114-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GLUDA2.715e-2445.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CLOTE2.715e-2443.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ARTS22.715e-2440.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
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