EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_NOCFA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nocardia farcinica GN=ispG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.546e-24
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQ 613
            +I+E    + E  K  G A   +RIG N GSL  R++  YG + P  +VESA   A +  +  F +   S+K ++PV+MV+AYR L A+      DYPLHLGVTEAG    G +KSA+  G LL +G+GDTIRVSL+ PP +E+    + L +L +R  +L+
Sbjct:  122 NIKEFDGRVKEVAKAAGAAGIPIRIGVNAGSLDKRMLEKYGKATPEALVESALWEASLFEEHGFGDIKISVKHNDPVIMVEAYRQLAAQC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSEGIGDTIRVSLSAPPVEEVKVGTQILQSLNLRPRKLE 278          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ARTAT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter aurescens (strain TC1) GN=ispG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.546e-24
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            ++  ++    +    + +G ++RIG N GSL   IM  YG + P  +VESA   A +  +  FH+F  S+K ++PV+MV AY     EM     D+PLHLGVTEAG    G +KSA   G LL  G+GDTIRVSL+ PP +EI    + L +L +R  +L+
Sbjct:  122 IRKFDDQVKEIAAAARDHGTSIRIGVNAGSLEPGIMKKYGKATPEALVESAVWEASLFEEHGFHDFKISVKHNDPVIMVAAY-----EMLAEKGDWPLHLGVTEAGPAFQGTIKSATAFGALLSRGIGDTIRVSLSAPPVEEIKVGNQILQSLNLRPRKLE 277          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_THEFY (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermobifida fusca (strain YX) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 63/161 (39.13%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP-RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQ 613
            ++  ++    + +   + G  +RIG N GSL  R+++ YG +    +VESA     +  +  FH+   S+K  +PVVM++AYR+L         DYPLHLGVTEAG    G +KSA+  G LL +G+GDTIRVSL+ PP +E+    + L +LG+R   L+
Sbjct:  121 IKKFDDKVGEIAKAASEAGIPIRIGVNAGSLDKRLLAKYGKATAEALVESALWECSLFEEHGFHDIKISVKHHDPVVMIRAYRMLAERC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLAEGIGDTIRVSLSAPPAEEVKVGIQILESLGLRQRGLE 276          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_NITSB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 75/183 (40.98%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRA----------------AELQKGVAPFEEKHRH 649
            +E    +V+ CK+    +RIG N GSL   I + YG +   MV+SA    ++   LDF +   SMKAS+    V+AYR L   +      YP HLGVTEAG      +KSAIGIG LL +G+GDTIRVS+T   EKEI+  R +     RA                A+L K VA  EEK +H
Sbjct:  108 KERIKEVVKACKERNIPIRIGVNAGSLEKEIEAKYGATSEAMVQSALYHIKLLEDLDFTDIKVSMKASDVERTVEAYRKLRPLV-----PYPFHLGVTEAGTVFHATIKSAIGIGALLLEGIGDTIRVSITGELEKEIEVGRAIIKDAGRASEGLNIISCPTCGRIEADLVKAVAEVEEKTKH 285          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ERWCT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 61/139 (43.88%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  149 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            EE    +V+  + Y   +RIG N GSL   I   YG+ +P  ++ESA     I  +L+F  F  S+KAS+  + VQ+YRLL A +     D PLHLG+TEAG    G +KSAIG+G LL +G+GDT+R+SL   P +E+
Sbjct:  115 EERIRSVVDCARYYNIPIRIGVNGGSLEKDIQEKYGEPTPEALLESAMRHVDILDRLNFDQFKVSVKASDVFLAVQSYRLLAARI-----DQPLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLRISLAADPVEEV 248          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ACICJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acidiphilium cryptum (strain JF-5) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.048e-24
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +V   + +G ++RIG N GSL   ++  YG+ +P  +VESA E A+I +  DFH F  S+KAS+  + V AY+ L AE+     D+PLH+G+TEAG    G +KS+IG+G+LL  G+GDT+RVSL+  PE+E+
Sbjct:  123 VVAAARDHGCSIRIGVNAGSLEKHLLEKYGEPNPDALVESALEHAKILQDHDFHEFKISVKASDVFMAVAAYQQL-AEVC----DHPLHIGITEAGGRRTGTVKSSIGLGSLLWAGIGDTMRVSLSAEPEEEV 250          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_LEIXX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leifsonia xyli subsp. xyli GN=ispG PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 64/161 (39.75%), Postives = 97/161 (60.25%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMRAAELQ 613
            ++  ++    +  + K    ++RIG N GSL  R++  YG  +   +VESA   A +  + DFH+F  S+K ++P+VMV+AYR+L         D+PLHLGVTEAG    G +KSA   G LL +G+GDTIRVSL+ PP +E+    + L +L +R  +L+
Sbjct:  114 IRKFDDQVGEIARRAKAADVSLRIGVNAGSLDRRLLEKYGKPTAEALVESAVWEASLFEEHDFHDFKISVKHNDPIVMVKAYRMLAER-----GDWPLHLGVTEAGPAFQGTIKSATAFGILLGEGIGDTIRVSLSAPPAEEVKVGLQILQSLNLRERKLE 269          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_HELPG (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Helicobacter pylori (strain G27) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAE 607
            +V+ CK+    +RIG N GSL  +    YG +P+GMVESA   A++   LDF NF  S+KAS+ +  ++AYR+L   +      YP HLGVTEAG      +KSA+ +G LL +G+GDT+RVS+T   E EI   R +     R  E
Sbjct:  116 VVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTNFKISLKASDVMRTIEAYRMLRPLVI-----YPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELENEIKVARAILRHSGRLKE 257          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CALS8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 61/158 (38.61%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  152 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY-GDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQKGV 622
            E    +V++ K+YG  +R+G N GSL   I+  Y   +P  +VE+A    R+    DF N + S+K+S+ +  +++Y +L          YPLH+G+TEAG    G +KS+I IG LL  G+GDTIRVSLT+ PEKE+   + +    ++  +L+KGV
Sbjct:  106 EKVKKIVDEAKRYGIPIRVGANSGSLPKEILEKYKSPTPEAIVEAALNQVRLLESFDFDNIVISVKSSDILTTIKSYEILSRRT-----SYPLHVGLTEAGTFIAGCVKSSIAIGHLLLQGIGDTIRVSLTDDPEKEVTVAKEI----LKGLKLKKGV 254          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_ARTCA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=ispG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.899e-24
Identity = 65/161 (40.37%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  137 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            ++  ++    +    + +G ++RIG N GSL   I+  YG + P  +VESA   A +  +  FH+F  S+K ++PV+MV AY     EM     D+PLHLGVTEAG    G +KSA   G LL  G+GDTIRVSL+ PP +EI    + L +L +R  +L+
Sbjct:  122 IRKFDDQVKEIAAAARDHGTSIRIGVNAGSLEPGILKKYGKATPEALVESAVWEASLFEEHGFHDFKISVKHNDPVIMVAAY-----EMLAEKGDWPLHLGVTEAGPAFQGTIKSATAFGALLSRGIGDTIRVSLSAPPVEEIKVGNQILQSLNLRPRKLE 277          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_NOCFA3.546e-2442.594-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ARTAT3.546e-2440.994-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEFY6.048e-2439.134-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NITSB6.048e-2440.984-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ERWCT6.048e-2443.884-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACICJ6.048e-2445.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEIXX7.899e-2439.754-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_HELPG7.899e-2442.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CALS87.899e-2438.614-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ARTCA7.899e-2440.374-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
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