EY711162

Overview
NameEY711162
Unique NameEY711162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_HELP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Helicobacter pylori (strain P12) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.032e-23
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAE 607
            +V+ CK+    +RIG N GSL  R    YG +P+GMVESA   A++   LDF +F  S+KAS+ +  ++AYR+L   +      YP HLGVTEAG      +KSA+ +G LL +G+GDT+RVS+T   E EI   R +     R  E
Sbjct:  116 VVDACKEKNIPIRIGVNAGSLEKRFDQKYGPTPKGMVESALYNAKLLEDLDFTDFKISLKASDVMRTIEAYRMLRPLVI-----YPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELENEIKVARAILRHSGRLKE 257          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_CORDI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Corynebacterium diphtheriae GN=ispG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.032e-23
Identity = 71/163 (43.56%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI---DPCRRLANLGMRAAEL 610
            +I+E    + E  K  G A   +RIG N GSL  RIM  YG + P  +VESA   A +     F +   S+K ++PV+MV+AYR L A+      DYPLHLGVTEAG    G +KS++  G+LL  G+GDTIRVSL+  P +EI   D   +  NL  R  E+
Sbjct:  126 NIKEFDGRVKEVAKAAGDAGIPIRIGVNAGSLDKRIMEKYGKATPEALVESALWEAGLFEDCGFGDIAISVKHNDPVIMVEAYRQLAAQS-----DYPLHLGVTEAGPAFQGTIKSSVAFGSLLSQGIGDTIRVSLSADPVEEIKVGDQILQSLNLRKRGLEI 283          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_HELPJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Helicobacter pylori J99 GN=ispG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.347e-23
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAE 607
            +V+ CK+    +RIG N GSL  +    YG +P+GMVESA   A++   LDF +F  S+KAS+ V  ++AYR+L   +      YP HLGVTEAG      +KSA+ +G LL +G+GDT+RVS+T   E EI   R +     R  E
Sbjct:  116 VVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTDFKISLKASDVVRTIEAYRMLRPLVI-----YPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELENEIKVARAILRHSGRLKE 257          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_BACLD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.347e-23
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  152 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 580
            E    +V   K+ G  +RIG N GSL  RI+  YG  +  GMVESA    +I   LDFH+ + SMKAS+  + ++AY     E     +DYPLHLG+TE+G    G +KSA G+G +L  G+G+T+R+SL+  P +E+   R L
Sbjct:  114 EKVEAVVNAAKEKGIPIRIGVNAGSLEKRILEKYGYPTADGMVESALHHIKILEDLDFHDIIVSMKASDVNLAIEAY-----EKAAKAFDYPLHLGITESGTLFAGTVKSAAGLGAILSKGIGNTLRISLSADPVEEVKVAREL 252          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_BACHD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacillus halodurans GN=ispG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.347e-23
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 2
Query:  167 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 580
            +V+  K+ G  +RIG N GSL  RI+  YG  +  GMVESA    +I   LDFH+ + SMKAS+  + ++AY     E     +DYPLHLG+TE+G    G +KSA G+G +L  G+G+T+RVSL+  P +E+   R L
Sbjct:  119 VVKAAKEKGIPIRIGVNAGSLEKRILDKYGYPTADGMVESALHHIKILEDLDFHDIIVSMKASDVNLAIEAY-----EKAAKAFDYPLHLGITESGTLFAGTVKSAAGLGAILNMGIGNTVRVSLSADPVEEVKVAREL 252          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_STRGG (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  200 VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEI 562
            +RIG N GSL  R++  YG + P  +VESA   A +  +  F +   S+K ++PVVMV AYR L A+      DYPLHLGVTEAG    G +KSA+  G LL +G+GDTIRVSL+ PP +E+
Sbjct:  142 IRIGVNAGSLDARLLKKYGKATPEALVESALWEASLFEEHGFGDIKISVKHNDPVVMVNAYRQLAAQS-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSEGIGDTIRVSLSAPPAEEV 258          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_MYCTU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycobacterium tuberculosis GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 71/162 (43.83%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            +I+E    + E  K  G A   +RIG N GSL  R M  YG + P  +VESA   A +  +  F +   S+K ++PVVMV AY LL A       DYPLHLGVTEAG    G +KSA+  G LL  G+GDTIRVSL+ PP +E+    + L +L +R   L+
Sbjct:  120 NIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMEKYGKATPEALVESALWEASLFEEHGFGDIKISVKHNDPVVMVAAYELLAARC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSRGIGDTIRVSLSAPPVEEVKVGNQVLESLNLRPRSLE 276          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_MYCTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 71/162 (43.83%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            +I+E    + E  K  G A   +RIG N GSL  R M  YG + P  +VESA   A +  +  F +   S+K ++PVVMV AY LL A       DYPLHLGVTEAG    G +KSA+  G LL  G+GDTIRVSL+ PP +E+    + L +L +R   L+
Sbjct:  120 NIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMEKYGKATPEALVESALWEASLFEEHGFGDIKISVKHNDPVVMVAAYELLAARC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSRGIGDTIRVSLSAPPVEEVKVGNQVLESLNLRPRSLE 276          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_MYCBT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 71/162 (43.83%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            +I+E    + E  K  G A   +RIG N GSL  R M  YG + P  +VESA   A +  +  F +   S+K ++PVVMV AY LL A       DYPLHLGVTEAG    G +KSA+  G LL  G+GDTIRVSL+ PP +E+    + L +L +R   L+
Sbjct:  120 NIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMEKYGKATPEALVESALWEASLFEEHGFGDIKISVKHNDPVVMVAAYELLAARC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSRGIGDTIRVSLSAPPVEEVKVGNQVLESLNLRPRSLE 276          
BLAST of EY711162 vs. ExPASy Swiss-Prot
Match: ISPG_MYCBP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ispG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.760e-23
Identity = 71/162 (43.83%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  143 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 613
            +I+E    + E  K  G A   +RIG N GSL  R M  YG + P  +VESA   A +  +  F +   S+K ++PVVMV AY LL A       DYPLHLGVTEAG    G +KSA+  G LL  G+GDTIRVSL+ PP +E+    + L +L +R   L+
Sbjct:  120 NIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMEKYGKATPEALVESALWEASLFEEHGFGDIKISVKHNDPVVMVAAYELLAARC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSRGIGDTIRVSLSAPPVEEVKVGNQVLESLNLRPRSLE 276          
The following BLAST results are available for this feature:
BLAST of EY711162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 435
Match NameE-valueIdentityDescription
ISPG_HELP21.032e-2342.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CORDI1.032e-2343.564-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_HELPJ1.347e-2342.864-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACLD1.347e-2342.364-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACHD1.347e-2343.884-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_STRGG1.760e-2349.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCTU1.760e-2343.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCTA1.760e-2343.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCBT1.760e-2343.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MYCBP1.760e-2343.834-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-E10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711162 ID=EY711162; Name=EY711162; organism=Citrus sinensis; type=EST; length=921bp
CACTAGTCCCCTCTTTCCTATTCCGGACTTATTTCTCGACCCCGCGTCCG
CGGACGCGTGTGGCGGACGCGTGGGTGCTGATAGACGGGCTCAGTTTGAG
CAGCTAGAGTACACAGACGATGAGTATCAGAAAGAACTTCAGCATATTGA
GGAGGTTTTTAGTCCATTGGTTGAGAAATGTAAAAAGTACGGAAGGGCAG
TGCGTATTGGGACTAACCATGGGAGCCTTTCAGATCGTATCATGAGCTAC
TATGGGGATTCTCCTAGGGGAATGGTTGAATCTGCCTTTGAGTTTGCAAG
AATCTGCCGGAAATTGGACTTCCATAATTTTCTCTTTTCAATGAAAGCAA
GCAACCCAGTCGTAATGGTCCAAGCATACCGTCTGCTTGTAGCTGAAATG
TACGTTCATGGCTGGGATTACCCATTACATTTGGGAGTGACTGAAGCTGG
AGAAGGTGAAGATGGTCGGATGAAATCTGCTATTGGAATTGGTACCCTTC
TTCAGGATGGTTTGGGTGATACAATCAGGGTTTCGCTTACAGAACCACCA
GAAAAGGAGATTGACCCTTGCAGAAGGTTGGCCAACCTGGGTATGAGAGC
AGCTGAGCTTCAGAAAGGAGTGGCACCATTTGAGGAAAAGCACAGACATT
ATTTTGATTTTCAGCGTCGTTCTGGTCAACTGCCAATTCAAAAGGAGGGT
GAGGAGGAGGATTACAGAGGTGCTCTGCACCGTGATGGCTCAGTTCTCAT
GTCCGTTTCTCTGGATCAGTTGAAGGCTCCGGAATTACTGTACAAGTCAC
TTGCAGCAAAGCTAGTCGTTGGCATGCCGTTNCAGGATCTAGCAACAGTC
GATTCAATCTTGTTAGGAGAGCTTCCNTCAGNTGATGATCATGATGCTCG
TCTAGCTCTGAAACGGGTTGT
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