EY711141

Overview
NameEY711141
Unique NameEY711141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_MYCBO (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 59/208 (28.37%), Postives = 110/208 (52.88%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 677
            ++AG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ +G  +    +   +++           V ++  G+     +  A  L +Q I VTV D R+  P+ +D +R+LA +H++L+T+E+  V GG GS V   L  + I    +  R + LP  + +H S ++ L + GL+ + ++  +
Sbjct:  414 DRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD-VGEDISALERRGGVDVLAAPADGLNHDVLLVAIGAFAPMALAVAKRLHNQGIGVTVIDPRWVLPV-SDGVRELAVQHKLLVTLEDNGVNGGAGSAVSAALRRAEI---DVPCRDVGLPQEFYEHASRSEVLADLGLTDQDVARRI 616          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_LEIXX (1-deoxy-D-xylulose-5-phosphate synthase OS=Leifsonia xyli subsp. xyli GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 63/223 (28.25%), Postives = 114/223 (51.12%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKEP 707
            F  ++AG+ G DGP+H G +D+  +  +P + + AP D       +A A  + D P+  RFP+G+     +P + +          +L E D+  V ++  G +    +  A  L +Q I  TV D R+  P+   ++  LA  H I++T+E+G  VGG G+ V   L  +GI      +  + LPD +IDH +  + L+++GL+ + I+  +++ +   + P
Sbjct:  415 FVLDRAGVTGPDGPSHHGIWDLAILQVVPGIRLAAPRDATRFREELAEAVAVADAPTVLRFPKGS-----VPADIEAVRRRDDGVDVLHESDQKDVLLVTVGPMAGLGLRVAEALAAQGIGATVVDPRWVVPVPRSVL-DLAAGHRIVVTMEDGIRVGGIGTRVRQDLREAGI---DTAVDELGLPDEFIDHATRDEILDDAGLTPQKIARDLVAQVLGSRVP 628          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_KOCRD (1-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.198e-19
Identity = 61/225 (27.11%), Postives = 113/225 (50.22%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLP-----PNNKGTPLEIGK-GRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKEPF 710
            ++AG+ G DGP+H G +D+  +  +P + + AP DEA ++  +  A  + D P+  R+P+G  +G  LP     P+        G+ G    E   V I+G G++    +  +  L +  +S TV D R+  P+   ++R  A  H I++ +E+G   GG GS +   +   G+      L  + LP  +++H S    LE +G++++ I+   L+ +   + P+
Sbjct:  428 DRAGVTGPDGPSHHGMWDLALLQIVPGLHLAAPRDEATMVEELREAVAVSDAPTVVRYPKG-AVGAPLPALERFPDGVDVLARNGEAGGPQGEQRDVLIVGVGAMCVTALEVSERLAAHGVSSTVLDPRWVLPVADSVVRTAA-RHRIVVVIEDGVRAGGIGSLIRQQMRAQGV---DTALNEVGLPTEFLEHASRDQILEHTGVTAQRIAQDTLASVLGTRVPY 647          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS1_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces coelicolor GN=dxs1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.789e-19
Identity = 63/217 (29.03%), Postives = 112/217 (51.61%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDR--VAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 689
            F  ++AG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  ++     IG   +L   DR  V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA  H ++  VE+ S   G GS V   L   G  +  + +R   +P++++ H   A+ L + GL+   ++  + + L
Sbjct:  413 FVLDRAGVTGVDGASHNGMWDMSVLQVVPGLRIAAPRDADQLRTQLREAVAVDDAPTLLRFPK-ESVGPAVPAVDR-----IGGLDVLHTADRSEVLLVAVGVMAPVCLGAAELLEARGIGCTVVDPRWVKPVDPAL-APLAARHRLVAVVEDNSRAAGVGSAVALAL---GDAEVDVPVRRFGIPEQFLAHAKRAEVLADIGLTPVDVAGRIAASL 619          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.158e-18
Identity = 62/220 (28.18%), Postives = 114/220 (51.82%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGS-VGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKE 704
            F  ++AG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+   +G  +P  +    +++       E  +V ++  G +   C+ AA +L+++ I  TV D R+ KP+D  L   LA EH ++  VE+ S   G G+ V   L LS   +  + +R   +P++++ H   A+ L + GL+   I+  + + L   +E
Sbjct:  413 FVLDRAGVTGVDGASHNGMWDMSILQVVPGLRIAAPRDADQLRAQLREAVAVDDAPTLLRFPK-ESVGPAIPAVDHVGGMDV--LHRFPESPQVLLVAVGVMAPVCLQAAELLEARGIGCTVVDPRWVKPVDPSL-PGLAAEHRLVAVVEDNSRAAGVGAAVA--LALSD-AEVDVPVRRFGIPEQFLAHAKRAEVLADIGLTPVEIAGRISAGLATKEE 625          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_CLOB8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.512e-18
Identity = 62/214 (28.97%), Postives = 111/214 (51.87%), Query Frame = 3
Query:   48 FSQEQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSL 686
            F+ ++AG+VG DG TH G  D++++S +PN+ ++ P    E+  ++   A+  + P   R+P+G  I   L P  +      G+  I+  G +V I+  G +VQ  ++A   L  + ++ TV +A F KP+D  L+  +  E   ++T+E+  + GG GS V  +L+    +D    +RS+   D +I  G+     +   L   +IS  V+ L
Sbjct:  410 FAIDRAGIVGEDGETHQGINDLSYLSMIPNIHIVVPKCLEEV-DVLLKWAINKNAPVAIRYPKGGNIIDTLSPIKEVVE---GQWEIVNRGSKVCIIATGRMVQHAMIAKEFLYEKGLNPTVINATFVKPIDKKLLENIKKEGYNILTIEDNIIKGGLGSAVKDYLS---EIDYKGTIRSLGYDDEFIPQGNVEILYKTYKLDYENISKIVMKL 616          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_SACEN (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 60/208 (28.85%), Postives = 105/208 (50.48%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 677
            +++G+ G DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ I  V P   +   +++       E   V +   G+  Q  V  A  L +Q I VTV D R+  P+    +  LA  H +++T+E+ G  GGFG  +   +    I    + LR + +P+R++ H S  + L + GL+ + I+  +
Sbjct:  416 DRSGITGDDGASHNGMWDLSILGAIPGIQVAAPRDAVTLREELREAVAVDDGPTVMRFPKGSVIEEV-PAVERIGGVDVLSKPASDERSEVLLAAVGAFGQLGVAVAERLAAQGIGVTVVDPRWVVPV-PQAVLDLAARHSLVVTLEDCGRHGGFGWSLAAAMRDQEI---DVPLRDLAVPNRFLQHASRDEVLSDLGLTEQDIARRI 618          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_ARTAT (1-deoxy-D-xylulose-5-phosphate synthase OS=Arthrobacter aurescens (strain TC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.975e-18
Identity = 69/237 (29.11%), Postives = 120/237 (50.63%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNK---GTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEG-SVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLXRPKEPF*FKYHTNQQHLALGS 755
            ++AG+ G DGP+H G +D+  +  +P + + AP D   L   +  A  I+D P+  RF +G+ +G  +   ++   G  +   +     E D V I+  G++ +  +  A  L +Q IS TV D R+  P+   +I  LA  H ++I +E+G   GG GS +   +  +G+      L  + LP  ++ HGS +  LE  GL+++ I+  V++ +   K PF  +    Q+H   GS
Sbjct:  424 DRAGVTGPDGPSHHGMWDMAMVQIVPGLHLAAPRDATRLREELREAVAINDAPTVVRFSKGS-VGSEIEAIDRLHDGVDILARRPDGSTEND-VLIVSVGAMSELALDVATRLGAQGISSTVVDPRWVLPVRKSII-ALAARHRLVICIEDGVRAGGVGSRIRQEMRAAGV---DTALNEVGLPVEFLVHGSRSQVLERVGLTAQKITHDVVAQVLGTKVPF-ARPLPGQEHPTTGS 653          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_RHOE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18
Identity = 58/208 (27.88%), Postives = 107/208 (51.44%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 677
            ++AG+ G DG +H G +D++ +  +P + V AP D   L   +  A ++DD P+  RFP+G     +         +++ K      GD V ++  G      +  A  L  Q ISV V D R+  P+   L++ +A+++ +++T+E+G + GG GS V   +  +G+       R M +P +++DH S     +E GL+++ +S  +
Sbjct:  416 DRAGVTGVDGASHNGVWDLSLLGIIPGIRVAAPRDADTLREELDEALLVDDGPTVVRFPKGAVPEAIPAVKRLDGMVDVLKASEGERGD-VLLVAVGPFASLALEIAERLDKQGISVAVVDPRWVLPVADSLVK-MADKYALVVTIEDGGLHGGIGSTVSAAMRAAGV---HTSCRDMGVPQQFLDHASREAIHKELGLTAQDLSRKI 618          
BLAST of EY711141 vs. ExPASy Swiss-Prot
Match: DXS_NOCFA (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardia farcinica GN=dxs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 62/217 (28.57%), Postives = 112/217 (51.61%), Query Frame = 3
Query:   57 EQAGLVGADGPTHCGAFDVTFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGVVLPPNNKGTPLEI-----GKGRILMEGDRVAILGYGSIVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEE-GSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 689
            ++AG+ G DG +H G +D++ +  +P + V AP D A L   +  A  + D P+  RFP+G+ +   L    +   +++      +  +  +   V I+  G   +  + AA +L  + +SVTV D R+  P+ +D + +LA  + +++T+E+ G  GG GS V   L   G LD P   R + +P +++DH S    LE+ GL+   ++  +   L
Sbjct:  417 DRAGITGPDGASHNGMWDLSLLGIIPGIRVAAPRDAATLREELGEALAVTDGPTVLRFPKGS-VAEDLTAVERIDGVDVLRAADPESAVRTQRGDVLIVAVGPFARIGLAAAELLAPEGVSVTVVDPRWVLPV-SDTVVKLAENYRLVVTLEDSGLHGGIGSTVSARLRSVG-LDVP--TRDLGVPQQFLDHASRDQVLEQLGLTPTDVARRIAGWL 628          
The following BLAST results are available for this feature:
BLAST of EY711141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_MYCBO5.198e-1928.371-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_LEIXX5.198e-1928.251-deoxy-D-xylulose-5-phosphate synthase OS=Leifson... [more]
DXS_KOCRD5.198e-1927.111-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria... [more]
DXS1_STRCO6.789e-1929.031-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS1_STRAW1.158e-1828.181-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_CLOB81.512e-1828.971-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_SACEN1.975e-1828.851-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_ARTAT1.975e-1829.111-deoxy-D-xylulose-5-phosphate synthase OS=Arthrob... [more]
DXS_RHOE43.369e-1827.881-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_NOCFA1.672e-1728.571-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-004-C07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711141 ID=EY711141; Name=EY711141; organism=Citrus sinensis; type=EST; length=852bp
GATGGGAGCAGGTTGACATGATGTAGACCTTCAAAATTACCAGTCCGTTT
TCCCAAGAACAAGCTGGTTTGGTTGGTGCGGATGGACCTACTCACTGTGG
AGCATTTGACGTCACATTCATGTCTTGCTTGCCCAACATGGTGGTCATGG
CTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTACCGCAGCAGTT
ATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGCAACGGAATTGG
AGTTGTTCTCCCGCCTAATAACAAAGGAACTCCACTTGAGATTGGGAAAG
GAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGGGCTATGGTTCT
ATAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAGAGCCAAGACAT
TTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTTGGATACAGACC
TCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTACTGTGGAAGAG
GGTTCTGTGGGAGGCTTTGGCTCTCATGTATGTCACTTTCTAACCTTAAG
TGGCATTCTGGATGGACCTCTCAAGTTGAGATCAATGGTGCTTCCTGATA
GATACATCGACCATGGATCACCAGCCGATCAGCTTGAAGAATCAGGGCTC
TCCTCNAGGCATATCTCTGCAACAGTCTTATCTCTCTTANGGAGGCCAAA
AGAGCCCTTCTGATTTAAGTATCATACAAATCAACAGCATCTTGCCCTTG
GATCAACTTACATTCCCAGTTGGGGGTGTAAACACTACAGGNCCAACTCT
AGAATCTTTACTTTCAATCCCCTGTAACATGAAGCATTACGTGGGATATA
AA
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