EY711080

Overview
NameEY711080
Unique NameEY711080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.848e-18
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS-----CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            VR + SGA+PL  ++ D ++  F   ++ +GYGMTE       C+  A +  +  SG  G+     E+K+VD PE N +     + RGEIC+RG  + +GY  +   TR  ID +GWLHTGDIG       L I+DR K I K  +G  VAP ++E
Sbjct:  303 VRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPYEIKSGACGTVVRNAEMKIVD-PETNASLPR--NQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKY-KGFQVAPAELE 454          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.848e-18
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS-----CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            VR + SGA+PL  ++ D ++  F   ++ +GYGMTE       C+  A +  +  SG  G+     E+K+VD PE N +     + RGEIC+RG  + +GY  +   TR  ID +GWLHTGDIG       L I+DR K I K  +G  VAP ++E
Sbjct:  303 VRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPYEIKSGACGTVVRNAEMKIVD-PETNASLPR--NQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKEIIKY-KGFQVAPAELE 454          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.270e-18
Identity = 69/211 (32.70%), Postives = 108/211 (51.18%), Query Frame = 2
Query:  146 MWDRLVFNKIRERLG-GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAIVAVDPDVLKIGL 760
            +++ L+ NK  ++L    +     G  P+   V +      G  ++EGYG+TE + ++S      D  SG +G P P+ E KLVD  +    +E  P   GE+CV+GP V  GY++    T E+I  +GWLHTGDI +    G L+I+DRKK++  L  G  V P +IE+V  +   V +        G S  +  + +V  DP + +  L
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDD----NEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESL 513          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.270e-18
Identity = 69/211 (32.70%), Postives = 108/211 (51.18%), Query Frame = 2
Query:  146 MWDRLVFNKIRERLG-GRVRFMGSGASPLSPDVMDFLKVCFGCQVMEGYGMTETSCIISAIDKG-DNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENVYAKCKFVLQCFIY----GDSFNSCLVAIVAVDPDVLKIGL 760
            +++ L+ NK  ++L    +     G  P+   V +      G  ++EGYG+TE + ++S      D  SG +G P P+ E KLVD  +    +E  P   GE+CV+GP V  GY++    T E+I  +GWLHTGDI +    G L+I+DRKK++  L  G  V P +IE+V  +   V +        G S  +  + +V  DP + +  L
Sbjct:  309 LFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDD----NEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESL 513          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.411e-17
Identity = 59/154 (38.31%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  212 SGASPLSPDVMDFLKVCF-GCQVMEGYGMTETSCIISAI---DKGDNLS--GHVGSPNPACEIKLVDVPEMNYTSEDQP-HPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIENV 652
            + A+PL+P+++   +  F   QV E YG+TE SCI       +KG  ++    VG   P  E+K +D P+   T    P +  GE+CVR   V QGY+ N+ +T + ID  GWLHTGDIG     G + I+DR K + K  +G  VAP ++E +
Sbjct:  307 TAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVGFILPNLEVKFID-PD---TGRSLPKNTSGELCVRSQCVMQGYFMNKEETDKTIDEQGWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAI 455          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.406e-17
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS-----CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            VR + SGA+PL  ++ D ++  F   ++ +GYGMTE       C+  A +  D  SG  G+     E+K+VD PE   +S  + HP GEIC+RG  + +GY  +   T   ID +GWLHTGDIG       L I+DR K + K  +G  VAP ++E
Sbjct:  311 VRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVD-PETG-SSLPRNHP-GEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 462          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.143e-17
Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMD-FLKVCFGCQVMEGYGMTETS-----CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            VR + SGA+P+  D+ D F+    G  + +GYGMTE       C+  A +     SG  G+     E+K++D         + P   GEIC+RG  + +GY  N   T+  ID +GWLHTGDIG       + I+DR K I K  +G  VAP ++E
Sbjct:  322 VRMVLSGAAPMGKDIEDAFMAKLPGAVLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAELKIIDPDTGKSLGRNLP---GEICIRGQQIMKGYLNNPEATKNTIDAEGWLHTGDIGYVDDDDEIFIVDRLKEIIKY-RGFQVAPAELE 473          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMDFLKVCF-GCQVMEGYGMTETS-----CIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            VR + SGA+PL  ++ D ++  F   ++ +GYGMTE       C+  A +  D  SG  G+     E+K+VD         +QP   GEIC+RG  + +GY  +   T   ID +GWLHTGDIG       L I+DR K + K  +G  VAP +IE
Sbjct:  307 VRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQP---GEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKY-KGFQVAPAEIE 458          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL1_DICDI (Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 62/154 (40.26%), Postives = 82/154 (53.25%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMDFLKVCFGCQVM--EGYGMTETSCIISAIDKGDNLSGHVGS--PNPACEIKLVDVPEMNYTSEDQPHPRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            +R + SGA+PLS +V D +K  F  +++  +GYG TE S     I  G   SG  G   PN   +I   +  E     E     +GEIC++GP V  GYY NE  T EVID DG+L TGDIG     G   I+DR K + K  +G  V P ++E
Sbjct:  316 LRTLFSGAAPLSSEVEDLIKERFKGRLVIKQGYGATELSPACFVIPSGLVKSGSAGILLPNQLAKIISPETGENLGMGE-----KGEICIKGPNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDRSKELIK-CKGFQVPPAELE 463          
BLAST of EY711080 vs. ExPASy Swiss-Prot
Match: 4CL2_DICDI (Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.001e-17
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  197 VRFMGSGASPLSPDVMDFLKVCFGCQVM--EGYGMTETSCIISAIDKGDNLSGHVGSPNPACEIKLVDVPEMNYTSEDQPH-PRGEICVRGPIVFQGYYKNEVQTREVIDGDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYVAPEKIE 646
            +R + SGA+PLS +V D +K  F  +++  +GYG TE S     I  G   SG  G   P   +K++  PE   T E+     +GEIC++GP V  GYY NE  T EVID DG+  TGDIG     G   I+DR K + K  +G  V P ++E
Sbjct:  316 LRTLFSGAAPLSREVEDLIKERFKGKLIIKQGYGATELSPACFVIPSGLIKSGSAGILLPNQLVKIIS-PE---TGENLGMGEKGEICIKGPNVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDRSKELIK-CKGFQVPPAELE 463          
The following BLAST results are available for this feature:
BLAST of EY711080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
4CL2_PETCR4.848e-1839.104-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_PETCR4.848e-1839.104-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
LCFA_ECOLI8.270e-1832.70Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL68.270e-1832.70Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
4CLL1_ARATH1.411e-1738.314-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CL_VANPL2.406e-1739.104-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL1_ORYSJ3.143e-1736.54Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CL1_TOBAC4.104e-1737.824-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL1_DICDI4.104e-1740.26Probable 4-coumarate--CoA ligase 1 OS=Dictyosteliu... [more]
4CL2_DICDI7.001e-1740.52Probable 4-coumarate--CoA ligase 2 OS=Dictyosteliu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711080 ID=EY711080; Name=EY711080; organism=Citrus sinensis; type=EST; length=901bp
CCACGCGTCCGCTCGGTTGTATAATCGAATATATTCTGGGATCACAAATG
CAGTAAAGGCTTCAGGGACTCTAAGGGAGAAGCTTTTCACAGCTGCATAC
AATTCCAAGAAGCAAGCTATAGTTAGTGGCCAAACTCCATCAAAGATGTG
GGACAGATTAGTATTTAATAAGATAAGGGAAAGGCTTGGAGGACGGGTTC
GTTTTATGGGATCAGGTGCTTCACCTTTGTCTCCAGATGTAATGGACTTC
TTGAAGGTGTGCTTTGGTTGTCAAGTAATGGAAGGATATGGTATGACTGA
GACTTCTTGTATCATTAGCGCTATAGACAAGGGTGATAACTTATCTGGTC
ATGTTGGATCTCCTAACCCTGCTTGTGAAATTAAACTTGTGGATGTTCCT
GAAATGAATTATACCTCTGAGGATCAGCCGCATCCCCGTGGCGAAATCTG
TGTCAGGGGTCCCATTGTTTTCCAAGGCTACTACAAAAATGAAGTTCAAA
CGAGAGAAGTGATTGATGGCGATGGTTGGCTGCATACAGGAGATATTGGT
TTGTGGTTGCCTGGTGGCCGACTTAAGATTATAGATAGAAAAAAAAACAT
TTTTAAGTTGGCGCAAGGAGAGTATGTAGCACCTGAGAAGATTGAGAATG
TTTATGCAAAGTGCAAGTTTGTTTTGCAGTGCTTTATATATGGTGATAGC
TTCAACTCTTGTTTAGTTGCTATTGTTGCAGTGGATCCTGATGTTTTAAA
GATTGGGCTGCATCTCAGGGGATCAAGTTTGAGGATTTAGAGCAGTTATG
CAATGATCTGAGGGCAAGAGCTGCTGTTCTTGCTGAGATGATGCANTTGG
AGAGGAAGCCANNTGAGAGGTTTCGATATGCAAAACTGTGACTCGATGCT
G
back to top