EY711078

Overview
NameEY711078
Unique NameEY711078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.031e-64
Identity = 126/229 (55.02%), Postives = 163/229 (71.18%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEE--HAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD--------YXEDVGVKVDRP 804
            DWYD+KAPS F  R++GKTL  RT GT IAS  L  RVFEVSL DL  E E   ++RK  L AE+VQG+ +LTNF GM+FTTDKLRSLV+KW TLIE  VDVKTTD++ LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I ++IEK+  SIYP+  V+IRKVK+LK P+FD+GKL+ +HG+          +  GV + RP
Sbjct:   29 DWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRP 257          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 3.464e-64
Identity = 131/230 (56.96%), Postives = 158/230 (68.70%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEE--EHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDV---------GVKVDRP 804
            DWYD+KAP+ F+ R VGKTL  RTQGT IAS GL  RVFEVSL DL NE   E ++RK  L AE V G++VLTNF GM  TTDKLRS+V+KW TLIE  VDVKTTD F LR+FCIGFT +     ++TCYAQ SQI+ IR KM  I+  +  S DLK +VEK + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  LM +HGD              GV VDRP
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVDRP 258          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.524e-64
Identity = 122/222 (54.95%), Postives = 155/222 (69.82%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKVDRPADE 813
            +WYDIKAPS F+ RNVGKTL  R+ G   AS  L  RV E  L DL   E+H++RKI L  ++VQGKN+LTN  GM+FTTDK RS+VRKW TLIEA V VKT+D + +R+F I FT++ PNQVK+TCYAQ+S IR IR+   EI+  +  +  L     K I EVI +E+E AT  I+PLQNV +RKVK+LK P+FDLG LM +HG+  ++ G KV    DE
Sbjct:   28 EWYDIKAPSTFKNRNVGKTLVNRSAGLKSASDTLKGRVVEACLADLQGSEDHSFRKIKLRVDEVQGKNLLTNIHGMDFTTDKYRSMVRKWQTLIEAQVTVKTSDEYVIRVFAIAFTRKQPNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 4.524e-64
Identity = 128/231 (55.41%), Postives = 159/231 (68.83%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEE--EHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD----------YXEDVGVKVDRP 804
            DWYD+KAP+ F  R VGKTL  RTQGT IAS GL  RVFEVSL DL N+   E ++RK  L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  VDVKTTDN+ LR+FCIGFT +     ++TCYAQ SQI+ IR+ M +I+     S DLK +V K + + I ++IEKA   +YPL +V+IRKVK+LK P+FDL  L+ +HGD             + GV VDRP
Sbjct:   29 DWYDVKAPNMFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSIAKDIEKACQGVYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVVVDRP 259          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.524e-64
Identity = 123/217 (56.68%), Postives = 162/217 (74.65%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKV 795
            +W+DIKAPS F  R VGKTL  R+ G   A+ GL  RV EV L DL   E+H+ RK+ L  ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+ IRKVK+LK P+FDLG L+ +HG+   E+ G KV
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A1_DEBHA (40S ribosomal protein S1-A OS=Debaryomyces hansenii GN=RPS1A PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.524e-64
Identity = 123/217 (56.68%), Postives = 162/217 (74.65%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKV 795
            +W+DIKAPS F  R VGKTL  R+ G   A+ GL  RV EV L DL   E+H+ RK+ L  ++VQGKN+LTNF G++FTTDKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVIGREIEK+T +I PLQN+ IRKVK+LK P+FDLG L+ +HG+   E+ G KV
Sbjct:   28 EWFDIKAPSTFENRAVGKTLINRSTGLKNAADGLKGRVVEVCLADLQGSEDHSSRKVKLRVDEVQGKNLLTNFHGIDFTTDKLRSLVRKWQSLVEANVTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.908e-64
Identity = 128/231 (55.41%), Postives = 159/231 (68.83%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEE--EHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD----------YXEDVGVKVDRP 804
            DWYD+KAP+ F  R VGKTL  RTQGT IAS GL  RVFEVSL DL N+   E ++RK  L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  VDVKTTD + LR+FCIGFT +     ++TCYAQ SQI++IRRKM  I+     S DLK +V K + + I ++IEK+   IYPL +V+IRKVK+LK P+FDL  L+ +HGD             + GV +DRP
Sbjct:   29 DWYDVKAPNMFSNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSIAKDIEKSCQGIYPLHDVYIRKVKVLKKPRFDLANLLELHGDGGGKGAEVSTGAAEGGVTIDRP 259          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.008e-63
Identity = 127/223 (56.95%), Postives = 159/223 (71.30%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKVDRPADE 813
            +WYDIKAPS F  RNVGKTL  ++ G   AS  L  RV EV L DL   E+H++RK+ L  ++VQGKN+LTNF GM+FTTDKLRS+VRKW TLIEA V VKT+D++ LR+F I FT++  NQVKRT YAQ+S IRQIR+ + EI+  +  +  L  L  K I EVI +EIE AT  I+PLQNV IRKVK+LK P+FDLG L+ +HG+   E+ G KV    DE
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSVGLKNASDSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRTSYAQSSHIRQIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGSLLSLHGEASAEEKGKKVAGFKDE 250          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.719e-63
Identity = 131/227 (57.71%), Postives = 167/227 (73.57%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKVDRPADEPMLK 825
            D Y +KAPS F  R+VGKT+  RT G   A+  L  R+FEVSL DL N++ H++RKI L  ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A++  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK P+FD+G L+ +HG+   +D G KV+R   E +L+
Sbjct:   28 DEYLVKAPSTFATRDVGKTIVNRTVGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLE 253          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.719e-63
Identity = 125/227 (55.07%), Postives = 162/227 (71.37%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKVDRPADEPMLK 825
            +WYDIKAP+ F  RNVGKTL  ++ G   A  GL  RV EVSL DL   E+H+++KI L  ++VQGKN+LTNF G +FT+DK+RSLVRKW +L+EA V VKT D++ LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I EVIGREIEKA   IYPLQNV IRKVK+LK  +FDLG L+ +HG+   E+ G KV     + +L+
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKWQSLVEANVTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKVGSEFQDVVLE 254          
The following BLAST results are available for this feature:
BLAST of EY711078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_ARTSF2.031e-6455.0240S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_ANOGA3.464e-6456.9640S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_ZYGRC4.524e-6454.9540S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_CULQU4.524e-6455.4140S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A2_DEBHA4.524e-6456.6840S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]
RS3A1_DEBHA4.524e-6456.6840S ribosomal protein S1-A OS=Debaryomyces hanseni... [more]
RS3A_AEDAE5.908e-6455.4140S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_KLULA1.008e-6356.9540S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_UNCRE1.719e-6357.7140S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]
RS3A_PICPG1.719e-6355.0740S ribosomal protein S1 OS=Pichia pastoris (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711078 ID=EY711078; Name=EY711078; organism=Citrus sinensis; type=EST; length=907bp
CGGACGCGTGGTCCAACTAAGACTACGTAGCATCGGAGCCGTCTCTTGAG
CAGCAGCTGCACAAACATGGCTGGCGGGAAGAACAAGAGGATTTCAAAGG
GGAAGAAAGGAGGCTAGAAGAAGGCTGCTGATCCGCTTGCCAAGAAGGAC
TGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAA
GACTCTTGGTACCCGGACTCAGGGGACCAATATTGCATCAAAAGGGCTCT
GGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAG
CATGCTTACAGGAAGATCATACTGACAGCTGAAGATGTCCAAGGGAAGAA
TGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGT
CTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAG
ACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAG
ACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTA
GACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCT
TGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAG
AGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCA
TTCGCAAAGTGAAGATCCTGAAAGCTCCCCAGTTTGATCTTGGAAAATTG
ATGGANGTTCACGGTGATTACTNCGAAGATGTTGGTGTGAAGGTGGATAG
GCCAGCTGATGAGCCCATGCTGAAGCACAACTNGAGTGATTGGAGCTTTG
ACGTGAATGAGAAAATTTTCTAGTTTTGTTTTCCTACTATCTGATCTGGG
CAGTTTG
back to top