EY711078

Overview
NameEY711078
Unique NameEY711078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 133/223 (59.64%), Postives = 160/223 (71.75%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXE--DVGVKVDRPAD 810
            +WYDIKAP+ F  R VGKTL  RTQGT IAS+GL  RVFEVSLGDL N  E  +RK  L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + IG++IEK  S +YPLQ V+IRKVKI+K P+ DLG+L  +HGD       G KVDRP D
Sbjct:   27 EWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDD 248          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 126/217 (58.06%), Postives = 163/217 (75.12%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKV 795
            +W+DIKAPS F  RNVGKTL  ++ G   A+ GL  RVFEV L DL   E+H+YRK+ L  ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK P+FDLG L+ +HG+   E+ G KV
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.406e-65
Identity = 126/217 (58.06%), Postives = 163/217 (75.12%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKV 795
            +W+DIKAPS F  RNVGKTL  ++ G   A+ GL  RVFEV L DL   E+H+YRK+ L  ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK P+FDLG L+ +HG+   E+ G KV
Sbjct:   28 EWFDIKAPSTFENRNVGKTLINKSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.837e-65
Identity = 128/227 (56.39%), Postives = 161/227 (70.93%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEE--EHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXE------DVGVKVDRP 804
            DWYDIKAPS F  R VGKTL  RTQGT IAS+GL  RV EVSL DL ++   E ++RK  L  EDVQ ++VL NF GM+ TTDKLRS+V+KW TLIEA+VDVKTTD + LR+FCIGFT++     ++T YAQ SQ+R IRRKM  I+  +   CDLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+ +HGD         + G KVDRP
Sbjct:   29 DWYDIKAPSMFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNRSVLCNFHGMDLTTDKLRSMVKKWQTLIEAHVDVKTTDGYLLRIFCIGFTQKDQMSTRKTSYAQHSQVRNIRRKMVSIVTDEITKCDLKGVVTKLVPDAIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGGSKTGEVGETGSKVDRP 255          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.399e-65
Identity = 124/218 (56.88%), Postives = 164/218 (75.23%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDY-XEDVGVKVD 798
            DW+DIKAPS F  RNVGKTL  R+ G   A+ GL  R+ EV+L DL   E+H+YR + L  ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F + FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK P+FDLG L+ +HG+   E+ G KV+
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGMKNAADGLKGRIVEVNLADLQGSEDHSYRNVKLRVDEVQGKNLLTNFHGLSFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFALAFTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGESGGEEKGRKVN 245          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.979e-65
Identity = 123/216 (56.94%), Postives = 158/216 (73.15%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKV 795
            +WYD+KAP  F VRN GKTL T+T G  +A+ GL  R++EV+L DL N+E+ A++KI L  + +  K+  T+F G++ T DKL SL+RK +TLIE Y DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK P+ D+ KLM +H D  ED G  V
Sbjct:   28 EWYDLKAPKMFLVRNFGKTLVTKTIGKKLATDGLKGRIYEVNLADLNNDEDQAHKKIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.115e-65
Identity = 123/216 (56.94%), Postives = 158/216 (73.15%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKV 795
            +WYD+KAP  F VRN GKTL T+T G  +A+ GL  R++EV+L DL N+E+ A++KI L  + +  K+  T+F G++ T DKL SL+RK +TLIE Y DVKT DN+ LR+FCI FTK+ PNQ K TCYAQTSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK P+ D+ KLM +H D  ED G  V
Sbjct:   28 EWYDLKAPKMFLVRNFGKTLVTKTIGKKLATDGLKGRIYEVNLADLNNDEDQAHKKIKLCCDHIINKDCYTDFCGLSITRDKLCSLIRKGYTLIEGYTDVKTIDNYQLRMFCIAFTKKRPNQTKTTCYAQTSQIKKIRKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.190e-64
Identity = 126/219 (57.53%), Postives = 158/219 (72.15%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDY----XEDVGVK 792
            DWYDIKAP+ F  RNVGKT   R+QG   A   L  R+ E SL DL  ++E AYRK  L  + +QG+  LTNF+GM+FT+DKLRSLVRKW +LIEA+ DVKTTD + LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I EVIGRE+EKAT  I+PL++V++RKVK+LKAP+ DL KL+ VHG       ED GVK
Sbjct:   27 DWYDIKAPTFFENRNVGKTFVNRSQGLKNADDSLKGRIVEASLADLNKDDEQAYRKFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVK 245          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.555e-64
Identity = 134/227 (59.03%), Postives = 168/227 (74.01%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKVDRPADEPMLK 825
            D Y +KAPS F VR+VGKT+  RT G   A+  L  R+FEVSL DL N++ H++RKI L  ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK P+FDLG L+ +HG+   +D G KV+R   E +L+
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLE 253          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.555e-64
Identity = 134/227 (59.03%), Postives = 168/227 (74.01%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGD-YXEDVGVKVDRPADEPMLK 825
            D Y +KAPS F VR+VGKT+  RT G   A+  L  R+FEVSL DL N++ H++RKI L  ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK P+FDLG L+ +HG+   +D G KV+R   E +L+
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLE 253          
The following BLAST results are available for this feature:
BLAST of EY711078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_CAEEL1.406e-6559.6440S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A2_CLAL41.406e-6558.0640S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL41.406e-6558.0640S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_LYSTE1.837e-6556.3940S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A1_PICST2.399e-6556.8840S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_PLAVI6.979e-6556.9440S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_PLAKH9.115e-6556.9440S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A_USTMA1.190e-6457.5340S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_COCP71.555e-6459.0340S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM1.555e-6459.0340S ribosomal protein S1 OS=Coccidioides immitis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711078 ID=EY711078; Name=EY711078; organism=Citrus sinensis; type=EST; length=907bp
CGGACGCGTGGTCCAACTAAGACTACGTAGCATCGGAGCCGTCTCTTGAG
CAGCAGCTGCACAAACATGGCTGGCGGGAAGAACAAGAGGATTTCAAAGG
GGAAGAAAGGAGGCTAGAAGAAGGCTGCTGATCCGCTTGCCAAGAAGGAC
TGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAA
GACTCTTGGTACCCGGACTCAGGGGACCAATATTGCATCAAAAGGGCTCT
GGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAG
CATGCTTACAGGAAGATCATACTGACAGCTGAAGATGTCCAAGGGAAGAA
TGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGT
CTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAG
ACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAG
ACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTA
GACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCT
TGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAG
AGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCA
TTCGCAAAGTGAAGATCCTGAAAGCTCCCCAGTTTGATCTTGGAAAATTG
ATGGANGTTCACGGTGATTACTNCGAAGATGTTGGTGTGAAGGTGGATAG
GCCAGCTGATGAGCCCATGCTGAAGCACAACTNGAGTGATTGGAGCTTTG
ACGTGAATGAGAAAATTTTCTAGTTTTGTTTTCCTACTATCTGATCTGGG
CAGTTTG
back to top