EY711077
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NOSP7 (50S ribosomal protein L6 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplF PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46 Identity = 89/170 (52.35%), Postives = 120/170 (70.59%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIGK+PI +P+ V + + G ++ VKGP GELS V + +E L V + ETR + Q+HGL RTL NMV GVS+GF+++L++ GVGYRA L+G+ LVL++G+SH V++ PDGI+ VE T + VSGYDK +G AA IR RPPEPYKGKG++Y EV+RR Sbjct: 2 SRIGKRPITIPAKVQVAINGTNIVVKGPKGELSRTLRDNVSLSQEGEILHVNRRDETRTSKQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQLQGRNLVLNMGYSHQVQIEPPDGIQFAVEGTTNVIVSGYDKEIVGNTAAKIRAVRPPEPYKGKGIRYAGEVVRR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NITHX (50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplF PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46 Identity = 91/170 (53.53%), Postives = 120/170 (70.59%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIGK+P+ VPS VT T+ GQ +++KGP G+L V +V+V E+ ++V ET RA ++G R N+V GV+KGFEKKL++VGVGYRAAL+G+ L L+LG+SH V IP+GI + V + T IT++G D +GQ AA IR +RPPEPYKGKGVKY DE I R Sbjct: 2 SRIGKRPVTVPSGVTATVEGQTVRMKGPKGQLEFVVHNDVEVKLENGAVKVAPRYETNRAQALYGTARAQVANLVAGVTKGFEKKLEIVGVGYRAALQGKTLQLALGYSHDVSYAIPEGITIAVPKPTEITIAGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADEFIFR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ALKMQ (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplF PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.455e-46 Identity = 90/171 (52.63%), Postives = 123/171 (71.93%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIG +PIEVP V IT+ +++ VKGP G+LS R++ V+ E + + V + E ++ +HGL RTL NMV GV+KG+EKKL++VGVGYRA ++G+ LVLSLGFSHPV + P+G+ + V T++TV G DK +G FAA IR++R PEPYKGKGV+Y EV+RR Sbjct: 2 SRIGLKPIEVPQGVEITVDEKNIVTVKGPNGQLSEKIHRDITVETEANVINVVRPTENKKHKSLHGLSRTLVANMVEGVTKGYEKKLELVGVGYRATMQGKKLVLSLGFSHPVEIDQPEGLTIEVPSQTQVTVKGIDKQQVGNFAAKIREYRKPEPYKGKGVRYAGEVVRR 172
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_AKKM8 (50S ribosomal protein L6 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplF PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.104e-45 Identity = 86/170 (50.59%), Postives = 122/170 (71.76%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SR+GK+ I +P VT+ + G ++V+GP G+LS P + E + L V + E+R+ +HG R+L +NMV+GVS+GF K L++VGVG+RAA++G +L L+LG SHP+ IP+G+KV V ENT++TV G DK +GQFAA +R + PPEPYKGKGV++V EVIRR Sbjct: 2 SRVGKKSITLPDKVTVKVNGSSVQVEGPKGKLSWTLPEGITATVEGNQLSVDRAGESRQLRALHGTNRSLLNNMVIGVSEGFVKNLEIVGVGFRAAVKGNILDLNLGKSHPINQVIPEGLKVTVTENTKVTVEGIDKQVVGQFAAEVRAYYPPEPYKGKGVRFVGEVIRR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BRAJA (50S ribosomal protein L6 OS=Bradyrhizobium japonicum GN=rplF PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.442e-45 Identity = 91/170 (53.53%), Postives = 121/170 (71.18%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SR+GK+P+ VPS VT T+ GQ +K+KGP G+L V +V+V E ++V+ +ET RA ++G R N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V TIP+GI + V + T ITV+G D +GQ AA IR +RPPEPYKGKGVKYV E I R Sbjct: 2 SRVGKRPVAVPSGVTATVDGQTVKMKGPKGQLQFVVHDDVEVKLESGQIKVKPRLETNRARALYGTARAQVANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVIYTIPEGITITVPKPTEITVTGSDIQRVGQVAAEIRSYRPPEPYKGKGVKYVGEFIFR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNR3 (50S ribosomal protein L6 OS=Synechococcus sp. (strain RCC307) GN=rplF PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.884e-45 Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIGK P+ +P V++ + G +KVKGP GEL V P V V + D+ + V + +RR+ + HGL RTL NMV GVSKGF KKL+++GVGYRA ++G+ LV+S G+SHPV M P+G+ VE NT +TVSG DK +G AA +R RPPEPYKGKG+KY E I R Sbjct: 2 SRIGKNPVPIPEKVSVEISGLTVKVKGPKGELERVLPDGVSVSQADNAVTVSPSDTSRRSRERHGLCRTLVANMVEGVSKGFSKKLEIIGVGYRAQVKGKKLVVSAGYSHPVEMDAPEGVTFAVENNTLVTVSGADKELVGNEAAKVRGIRPPEPYKGKGIKYQGERILR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNJB (50S ribosomal protein L6 OS=Synechococcus sp. GN=rplF PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45 Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIG++PI +P+ V I + GQ + VKGP G+LS P + V + L V + ++R A Q+HGL RTL NMV GVSKGFE++L++VGVGYRAA++G LVL++G+SHPV + P GI++ VE N I VSG DK +G AA IR RPPEPYKGKG++Y+ E +RR Sbjct: 2 SRIGRRPIALPAKVEIQIDGQHIAVKGPKGQLSRSLPPLITVQQNAQMLTVSRLNDSRPARQLHGLCRTLVANMVDGVSKGFERRLELVGVGYRAAIQGSKLVLNVGYSHPVEIPFPPGIQIAVEGNNIIVVSGTDKELVGNTAARIRAVRPPEPYKGKGIRYLGEQVRR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CLOD6 (50S ribosomal protein L6 OS=Clostridium difficile (strain 630) GN=rplF PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.213e-45 Identity = 88/171 (51.46%), Postives = 118/171 (69.01%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLG-GQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIG +PI +P+ V +T+ G + VKGP G L+ E+ + +E++ + V + + ++ +HGL RTL DNMVVGV+ GFEKKL++ GVGYRA +G+ LV++LGFSHPV M P+GI V T + V G DK +G +AA IR WR PEPYKGKG+KYVDEVIRR Sbjct: 2 SRIGVKPIIIPAGVEVTIAEGNLVTVKGPKGTLTKQLSAELNIKKEENTIMVERPTDNKKHRSLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRR 172
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CYAP8 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 8801) GN=rplF PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.196e-45 Identity = 91/170 (53.53%), Postives = 119/170 (70.00%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIGK+PI +P+ VTI + GQ + VKGP G L P +V V +E+ L V++ ++R A + HGL RTL NMV GVSKGFEK+L + GVGYRA ++G L L++G+S PV MT+P GI+V VE NT + VSG DK +G +A IR RPPE YKGKG++Y DE +RR Sbjct: 2 SRIGKRPIPIPNKVTIDIQGQHVAVKGPKGSLERTLPDKVNVVQENDTLLVQREDDSRTARERHGLTRTLVANMVEGVSKGFEKRLSIQGVGYRAQVQGTKLTLNVGYSKPVEMTMPAGIQVAVENNTLVIVSGIDKEIVGNVSAEIRAVRPPEVYKGKGIRYSDEFVRR 171
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROMP (50S ribosomal protein L6 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplF PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45 Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 3 Query: 18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527 SRIGK P+++P V++ + G + VKGP GEL + P V D++++ + V R + + HGL RTL NMV GV++G+EKKL++VGVG RA ++G+ LV+S G+SHPV MT PDGI VE NT +TVSG DK +G AA IR RPPEPYKGKG+KY DE I R Sbjct: 2 SRIGKSPVQIPEKVSVDIKGLSITVKGPKGELKRLMPEGVNFDQKENQIVVTPATTKRYSRERHGLCRTLISNMVQGVTEGYEKKLEIVGVGSRAQVKGKNLVVSAGYSHPVEMTPPDGITYKVESNTNVTVSGIDKEIVGNEAAKIRSIRPPEPYKGKGIKYQDERIIR 171 The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bpback to top |