EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NOSP7 (50S ribosomal protein L6 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplF PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 89/170 (52.35%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V + + G ++ VKGP GELS      V + +E   L V +  ETR + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA L+G+ LVL++G+SH V++  PDGI+  VE  T + VSGYDK  +G  AA IR  RPPEPYKGKG++Y  EV+RR
Sbjct:    2 SRIGKRPITIPAKVQVAINGTNIVVKGPKGELSRTLRDNVSLSQEGEILHVNRRDETRTSKQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQLQGRNLVLNMGYSHQVQIEPPDGIQFAVEGTTNVIVSGYDKEIVGNTAAKIRAVRPPEPYKGKGIRYAGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NITHX (50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplF PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.474e-46
Identity = 91/170 (53.53%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VPS VT T+ GQ +++KGP G+L  V   +V+V  E+  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++VGVGYRAAL+G+ L L+LG+SH V   IP+GI + V + T IT++G D   +GQ AA IR +RPPEPYKGKGVKY DE I R
Sbjct:    2 SRIGKRPVTVPSGVTATVEGQTVRMKGPKGQLEFVVHNDVEVKLENGAVKVAPRYETNRAQALYGTARAQVANLVAGVTKGFEKKLEIVGVGYRAALQGKTLQLALGYSHDVSYAIPEGITIAVPKPTEITIAGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ALKMQ (50S ribosomal protein L6 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplF PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.455e-46
Identity = 90/171 (52.63%), Postives = 123/171 (71.93%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG +PIEVP  V IT+  +++  VKGP G+LS    R++ V+ E + + V +  E ++   +HGL RTL  NMV GV+KG+EKKL++VGVGYRA ++G+ LVLSLGFSHPV +  P+G+ + V   T++TV G DK  +G FAA IR++R PEPYKGKGV+Y  EV+RR
Sbjct:    2 SRIGLKPIEVPQGVEITVDEKNIVTVKGPNGQLSEKIHRDITVETEANVINVVRPTENKKHKSLHGLSRTLVANMVEGVTKGYEKKLELVGVGYRATMQGKKLVLSLGFSHPVEIDQPEGLTIEVPSQTQVTVKGIDKQQVGNFAAKIREYRKPEPYKGKGVRYAGEVVRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_AKKM8 (50S ribosomal protein L6 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplF PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.104e-45
Identity = 86/170 (50.59%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+ I +P  VT+ + G  ++V+GP G+LS   P  +    E + L V +  E+R+   +HG  R+L +NMV+GVS+GF K L++VGVG+RAA++G +L L+LG SHP+   IP+G+KV V ENT++TV G DK  +GQFAA +R + PPEPYKGKGV++V EVIRR
Sbjct:    2 SRVGKKSITLPDKVTVKVNGSSVQVEGPKGKLSWTLPEGITATVEGNQLSVDRAGESRQLRALHGTNRSLLNNMVIGVSEGFVKNLEIVGVGFRAAVKGNILDLNLGKSHPINQVIPEGLKVTVTENTKVTVEGIDKQVVGQFAAEVRAYYPPEPYKGKGVRFVGEVIRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BRAJA (50S ribosomal protein L6 OS=Bradyrhizobium japonicum GN=rplF PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.442e-45
Identity = 91/170 (53.53%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V+V  E   ++V+  +ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V  TIP+GI + V + T ITV+G D   +GQ AA IR +RPPEPYKGKGVKYV E I R
Sbjct:    2 SRVGKRPVAVPSGVTATVDGQTVKMKGPKGQLQFVVHDDVEVKLESGQIKVKPRLETNRARALYGTARAQVANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVIYTIPEGITITVPKPTEITVTGSDIQRVGQVAAEIRSYRPPEPYKGKGVKYVGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNR3 (50S ribosomal protein L6 OS=Synechococcus sp. (strain RCC307) GN=rplF PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.884e-45
Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ +P  V++ + G  +KVKGP GEL  V P  V V + D+ + V  +  +RR+ + HGL RTL  NMV GVSKGF KKL+++GVGYRA ++G+ LV+S G+SHPV M  P+G+   VE NT +TVSG DK  +G  AA +R  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKNPVPIPEKVSVEISGLTVKVKGPKGELERVLPDGVSVSQADNAVTVSPSDTSRRSRERHGLCRTLVANMVEGVSKGFSKKLEIIGVGYRAQVKGKKLVVSAGYSHPVEMDAPEGVTFAVENNTLVTVSGADKELVGNEAAKVRGIRPPEPYKGKGIKYQGERILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNJB (50S ribosomal protein L6 OS=Synechococcus sp. GN=rplF PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.460e-45
Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG++PI +P+ V I + GQ + VKGP G+LS   P  + V +    L V +  ++R A Q+HGL RTL  NMV GVSKGFE++L++VGVGYRAA++G  LVL++G+SHPV +  P GI++ VE N  I VSG DK  +G  AA IR  RPPEPYKGKG++Y+ E +RR
Sbjct:    2 SRIGRRPIALPAKVEIQIDGQHIAVKGPKGQLSRSLPPLITVQQNAQMLTVSRLNDSRPARQLHGLCRTLVANMVDGVSKGFERRLELVGVGYRAAIQGSKLVLNVGYSHPVEIPFPPGIQIAVEGNNIIVVSGTDKELVGNTAARIRAVRPPEPYKGKGIRYLGEQVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CLOD6 (50S ribosomal protein L6 OS=Clostridium difficile (strain 630) GN=rplF PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.213e-45
Identity = 88/171 (51.46%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLG-GQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG +PI +P+ V +T+  G  + VKGP G L+     E+ + +E++ + V +  + ++   +HGL RTL DNMVVGV+ GFEKKL++ GVGYRA  +G+ LV++LGFSHPV M  P+GI V     T + V G DK  +G +AA IR WR PEPYKGKG+KYVDEVIRR
Sbjct:    2 SRIGVKPIIIPAGVEVTIAEGNLVTVKGPKGTLTKQLSAELNIKKEENTIMVERPTDNKKHRSLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKGKGIKYVDEVIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CYAP8 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 8801) GN=rplF PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.196e-45
Identity = 91/170 (53.53%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ VTI + GQ + VKGP G L    P +V V +E+  L V++  ++R A + HGL RTL  NMV GVSKGFEK+L + GVGYRA ++G  L L++G+S PV MT+P GI+V VE NT + VSG DK  +G  +A IR  RPPE YKGKG++Y DE +RR
Sbjct:    2 SRIGKRPIPIPNKVTIDIQGQHVAVKGPKGSLERTLPDKVNVVQENDTLLVQREDDSRTARERHGLTRTLVANMVEGVSKGFEKRLSIQGVGYRAQVQGTKLTLNVGYSKPVEMTMPAGIQVAVENNTLVIVSGIDKEIVGNVSAEIRAVRPPEVYKGKGIRYSDEFVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROMP (50S ribosomal protein L6 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+++P  V++ + G  + VKGP GEL  + P  V  D++++ + V      R + + HGL RTL  NMV GV++G+EKKL++VGVG RA ++G+ LV+S G+SHPV MT PDGI   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG+KY DE I R
Sbjct:    2 SRIGKSPVQIPEKVSVDIKGLSITVKGPKGELKRLMPEGVNFDQKENQIVVTPATTKRYSRERHGLCRTLISNMVQGVTEGYEKKLEIVGVGSRAQVKGKNLVVSAGYSHPVEMTPPDGITYKVESNTNVTVSGIDKEIVGNEAAKIRSIRPPEPYKGKGIKYQDERIIR 171          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_NOSP76.474e-4652.3550S ribosomal protein L6 OS=Nostoc punctiforme (st... [more]
RL6_NITHX6.474e-4653.5350S ribosomal protein L6 OS=Nitrobacter hamburgens... [more]
RL6_ALKMQ8.455e-4652.6350S ribosomal protein L6 OS=Alkaliphilus metallire... [more]
RL6_AKKM81.104e-4550.5950S ribosomal protein L6 OS=Akkermansia muciniphil... [more]
RL6_BRAJA1.442e-4553.5350S ribosomal protein L6 OS=Bradyrhizobium japonic... [more]
RL6_SYNR31.884e-4552.9450S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_SYNJB2.460e-4552.9450S ribosomal protein L6 OS=Synechococcus sp. GN=r... [more]
RL6_CLOD63.213e-4551.4650S ribosomal protein L6 OS=Clostridium difficile ... [more]
RL6_CYAP84.196e-4553.5350S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_PROMP5.481e-4552.3550S ribosomal protein L6 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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