EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNP6 (50S ribosomal protein L6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 85/170 (50.00%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V++ + G+ + VKGP GELS   P  V V +ED  + V +  E+R A Q HGL RTL  N+V GV  GF+K+L+++GVGYRA ++G  L+L++G+S+PV++  P+GI+  VE NT + VSG  K  +G  AA IR  RPPEPYKGKG++Y  EV+ R
Sbjct:    2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLARQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGIQFVVENNTNVVVSGISKEVVGNTAARIRAVRPPEPYKGKGIRYAGEVVLR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNE7 (50S ribosomal protein L6 OS=Synechococcus elongatus (strain PCC 7942) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 85/170 (50.00%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V++ + G+ + VKGP GELS   P  V V +ED  + V +  E+R A Q HGL RTL  N+V GV  GF+K+L+++GVGYRA ++G  L+L++G+S+PV++  P+GI+  VE NT + VSG  K  +G  AA IR  RPPEPYKGKG++Y  EV+ R
Sbjct:    2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLARQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGIQFVVENNTNVVVSGISKEVVGNTAARIRAVRPPEPYKGKGIRYAGEVVLR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOPS (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRA+L+G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA IR +RPPEPYKGKGV+Y DE I R
Sbjct:    2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGSVKVAPRFETNRAQALYGTARAQIANLVDGVTKGFEKKLEITGVGYRASLQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQKVGQVAAEIRDYRPPEPYKGKGVRYSDEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROMM (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 88/170 (51.76%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK PI +P  V +TL G  + VKGP GELS   P  V V + ++ + V  T + R++ + HGL R+L  NMV GVSKG+ +KL+++GVG RA ++G+ LV+S GFSHPV M  P+G+   VE NT +TVSG DK  +G  AA IR  RPPEPYKGKG++Y  E I R
Sbjct:    2 SRIGKNPIPIPDKVAVTLDGLAVSVKGPKGELSRTLPEGVSVSQVENTIVVTPTSQKRKSRERHGLCRSLVANMVEGVSKGYTRKLELIGVGSRAQVKGKKLVVSAGFSHPVEMDPPEGVTFAVENNTNVTVSGADKELVGNEAAKIRAIRPPEPYKGKGIRYEGERILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_OCEIH (50S ribosomal protein L6 OS=Oceanobacillus iheyensis GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 82/170 (48.24%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+G +P+E+P  V + L    + VKGP GELS     ++K++ ED+ L V +  + +    +HG  R+L +NMV+GVSKGFEK L+++GVGYRA  +G   V++ G+SHPV +   DGI++ V +NT+ITV G DK  +G  AA+IR  RPPEPYKGKG++Y DE +RR
Sbjct:    2 SRVGLKPVEIPEGVELKLDNNTVTVKGPKGELSRELHPDMKINIEDNVLTVERPSDHKEHRALHGTTRSLINNMVIGVSKGFEKSLEIIGVGYRAQKQGDKTVINAGYSHPVELEAIDGIEIEVPKNTQITVKGIDKELVGAIAANIRAIRPPEPYKGKGIRYTDEYVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CAUCR (50S ribosomal protein L6 OS=Caulobacter crescentus GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ + +PS V +TL GQ + VKGP G+LS     EV+V +E + L +   V+T+RA  M GL RTL  NMV GV+ GFE+ L++VGVGYRAA++G  L L LGFSH V +  P G+   V + T I ++G DK A+G+ AA IR+ RPPEPYKGKGV+Y  E +RR
Sbjct:    2 SRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKRAKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAGVTFAVPKQTEIKIAGIDKQAVGEIAAKIRRIRPPEPYKGKGVRYAGEKVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CAUCN (50S ribosomal protein L6 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplF PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ + +PS V +TL GQ + VKGP G+LS     EV+V +E + L +   V+T+RA  M GL RTL  NMV GV+ GFE+ L++VGVGYRAA++G  L L LGFSH V +  P G+   V + T I ++G DK A+G+ AA IR+ RPPEPYKGKGV+Y  E +RR
Sbjct:    2 SRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKRAKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAGVTFAVPKQTEIKIAGIDKQAVGEIAAKIRRIRPPEPYKGKGVRYAGEKVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOP2 (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplF PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 89/170 (52.35%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT ++ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAAL+G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA IR +RPPEPYKGKGV+Y DE I R
Sbjct:    2 SRVGKKPVTVPSGVTASVEGQTVKMKGPKGQLHFVVHDDVDVKFEDGSVKVAPRFETNRAQALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAALQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQKVGQVAAEIRDYRPPEPYKGKGVRYSDEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NITOC (50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 87/171 (50.88%), Postives = 115/171 (67.25%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQ-DLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRI   P+ +P  V +TL G  D+KVKG  G L+      ++V ++   LR       +R N + G  R L +NMV GVS+GFE++LQ+VGVGYRA L+G+ LVLSLG+SHPV  T P+G+ + V   T I V GYDK  +GQ AA+IR++RPPEPYKGKGV+Y DEV+ R
Sbjct:    2 SRIADNPVSIPKGVEVTLSGDNDIKVKGAKGSLAFAIHPLIQVVQDGETLRFSAKSTDKRVNALRGTTRALINNMVQGVSQGFERRLQLVGVGYRAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQVGQAAANIRRFRPPEPYKGKGVRYADEVVVR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SALAI (50S ribosomal protein L6 OS=Salinispora arenicola (strain CNS-205) GN=rplF PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 88/171 (51.46%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG++ I VP+ V +T+ GQ +KVKGP GELS      + V+R ED  L V +  + R+A ++HGL RTL  NM+VGV++G+ K L++ G GYR   +G+ L  +LGFSHPV +  P+GI  +VE+ T   V+G +K  +G+ AA+IRK RPPEPYKGKGVKY  EVIRR
Sbjct:    2 SRIGRKSIPVPAGVDVTIDGQTVKVKGPKGELSHTLAEPITVERAEDGQLNVARPNDERKAKELHGLSRTLVANMIVGVTEGYRKSLEIAGTGYRVTAKGKDLEFALGFSHPVTVVAPEGITFSVEKPTLFHVAGINKQLVGEVAANIRKIRPPEPYKGKGVKYQGEVIRR 172          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_SYNP61.763e-4350.0050S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_SYNE71.763e-4350.0050S ribosomal protein L6 OS=Synechococcus elongatu... [more]
RL6_RHOPS1.763e-4352.3550S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_PROMM1.763e-4351.7650S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_OCEIH1.763e-4348.2450S ribosomal protein L6 OS=Oceanobacillus iheyens... [more]
RL6_CAUCR1.763e-4352.3550S ribosomal protein L6 OS=Caulobacter crescentus... [more]
RL6_CAUCN1.763e-4352.3550S ribosomal protein L6 OS=Caulobacter crescentus... [more]
RL6_RHOP22.303e-4352.3550S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_NITOC2.303e-4350.8850S ribosomal protein L6 OS=Nitrosococcus oceani (... [more]
RL6_SALAI3.007e-4351.4650S ribosomal protein L6 OS=Salinispora arenicola ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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