EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_YERPN (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA +R +R PEPYKGKGV+Y DEV+R
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_YERPG (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA +R +R PEPYKGKGV+Y DEV+R
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_YERPE (50S ribosomal protein L6 OS=Yersinia pestis GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA +R +R PEPYKGKGV+Y DEV+R
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_YERPB (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA +R +R PEPYKGKGV+Y DEV+R
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_YERPA (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA +R +R PEPYKGKGV+Y DEV+R
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_YERP3 (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 78/169 (46.15%), Postives = 106/169 (62.72%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA +R +R PEPYKGKGV+Y DEV+R
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_THESQ (50S ribosomal protein L6 OS=Thermotoga sp. (strain RQ2) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 77/177 (43.50%), Postives = 115/177 (64.97%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVR-------KTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+ K+PI +P  VT+ +    +KVKGP GELS  +   VK++ E + + VR       +  + R+     G + +L  NMVVGV++G++K+L++VG+GYRA L+G  +V++LG++HPV   IP  +K+ V    RI VSG DK  +GQ AA IR +RPP  Y GKG++YV EV+R+
Sbjct:    2 SRLAKKPIVLPQGVTVEIKDNVVKVKGPKGELSQEFLPYVKIEVEGNEVWVRPNENQIIRKSDWRKIKMFQGTYWSLIRNMVVGVTEGYKKELEIVGIGYRAQLQGNTVVMNLGYAHPVVYEIPSDVKIEVPAPNRIVVSGIDKQRVGQVAAEIRAFRPPNVYTGKGIRYVGEVVRQ 178          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_THEP1 (50S ribosomal protein L6 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 77/177 (43.50%), Postives = 115/177 (64.97%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVR-------KTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+ K+PI +P  VT+ +    +KVKGP GELS  +   VK++ E + + VR       +  + R+     G + +L  NMVVGV++G++K+L++VG+GYRA L+G  +V++LG++HPV   IP  +K+ V    RI VSG DK  +GQ AA IR +RPP  Y GKG++YV EV+R+
Sbjct:    2 SRLAKKPIVLPQGVTVEIKDNVVKVKGPKGELSQEFLPYVKIEVEGNEVWVRPNENQIIRKSDWRKIKMFQGTYWSLIRNMVVGVTEGYKKELEIVGIGYRAQLQGNTVVMNLGYAHPVVYEIPSDVKIEVPAPNRIVVSGIDKQRVGQVAAEIRAFRPPNVYTGKGIRYVGEVVRQ 178          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_THEM4 (50S ribosomal protein L6 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 73/176 (41.48%), Postives = 112/176 (63.64%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVE-------TRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SRI  +PI +P+ V + +     KVKGP GELS  +   +K++  ++ + V+  +E        ++     G +  L +NM++GV++GF K+L+++G+GYRA L+G+ LV++LG++HPV M IP  + V V    RI VSG DK  +GQ AA IR+WR P  Y GKG++YV EV+R
Sbjct:    2 SRIANKPIVIPNGVEVKVENNVFKVKGPKGELSQEFLPYIKIEVNENEIYVKPNLEFMKRKSDLKKMKMFTGTYWRLFNNMIIGVTQGFRKELEIIGIGYRAQLQGKKLVMNLGYAHPVEMEIPSDVAVEVPSPNRIVVSGIDKQRVGQVAADIRRWREPNVYSGKGIRYVGEVVR 177          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SULNB (50S ribosomal protein L6 OS=Sulfurovum sp. (strain NBC37-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 81/170 (47.65%), Postives = 111/170 (65.29%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VPS + ++L G  L  K    E  L     V ++ + S +   +  + ++     G +R L +N++VG+ KG+ K L++ GVGYRAA+EG+ L L LGFSH V   IP+G+ + V++N  ITVSG DK A+GQ AA IR +RPPEPYKGKGVKY DEVI R
Sbjct:    2 SRIGKRPVTVPSGIEVSLDGTTLVAKKGNLEKRLETHGRVGINIDGSEVTFTRVGDEKQDAAFWGTYRALFNNIMVGLDKGYSKSLEINGVGYRAAVEGKTLKLQLGFSHDVNFEIPEGLDIKVDKNI-ITVSGTDKQAVGQAAAEIRAYRPPEPYKGKGVKYTDEVIIR 170          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_YERPN2.087e-3646.1550S ribosomal protein L6 OS=Yersinia pestis bv. An... [more]
RL6_YERPG2.087e-3646.1550S ribosomal protein L6 OS=Yersinia pestis bv. An... [more]
RL6_YERPE2.087e-3646.1550S ribosomal protein L6 OS=Yersinia pestis GN=rpl... [more]
RL6_YERPB2.087e-3646.1550S ribosomal protein L6 OS=Yersinia pseudotubercu... [more]
RL6_YERPA2.087e-3646.1550S ribosomal protein L6 OS=Yersinia pestis bv. An... [more]
RL6_YERP32.087e-3646.1550S ribosomal protein L6 OS=Yersinia pseudotubercu... [more]
RL6_THESQ2.087e-3643.5050S ribosomal protein L6 OS=Thermotoga sp. (strain... [more]
RL6_THEP12.087e-3643.5050S ribosomal protein L6 OS=Thermotoga petrophila ... [more]
RL6_THEM42.087e-3641.4850S ribosomal protein L6 OS=Thermosipho melanesien... [more]
RL6_SULNB2.087e-3647.6550S ribosomal protein L6 OS=Sulfurovum sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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