EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOP5 (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplF PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT ++ GQ +KVKGP G+L  V   +V V  E+  + V+   ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRA L+G+ L L+LG+SH V  TIP+GI + V + T I + G D   +GQ AA IR +RPPEPYKGKGV+Y +E I R
Sbjct:    2 SRVGKKPVTVPSGVTASVEGQTVKVKGPKGQLQFVVHDDVDVKLENGEVTVKPRYETNRARALYGTARAQVANLVEGVTKGFEKKLEITGVGYRATLQGKNLQLALGYSHDVVYTIPEGIAITVPKPTEINIVGIDSQVVGQVAAEIRSYRPPEPYKGKGVRYANEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PHEZH (50S ribosomal protein L6 OS=Phenylobacterium zucineum (strain HLK1) GN=rplF PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 87/170 (51.18%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ + VPS VT+T+ GQ + VKGP G+L+     E++V +E + + + K  E+ RA  M GL RTL +NMVVGV++G+E+ L++VGVGYRAA++GQ L + LGFSH V +  P GI     + T I +SG DK  +G+ AA IR+ RPPEPYKGKGV+Y  E +RR
Sbjct:    2 SRIGKKAVAVPSGVTVTIDGQTVTVKGPKGQLAWTVAEEIEVRQEGAEILLSKRDESTRAQAMWGLSRTLVNNMVVGVTQGYEQTLELVGVGYRAAMKGQALSMQLGFSHDVDVAPPAGITFATPKQTEIKISGIDKQLVGETAARIRRLRPPEPYKGKGVRYAGENVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PARUW (50S ribosomal protein L6 OS=Protochlamydia amoebophila (strain UWE25) GN=rplF PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 84/170 (49.41%), Postives = 118/170 (69.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR GK PI +P+ V + +   ++ VKGP G L+      V V+ E + + V    E  +    HGL+RTL  NMVVG ++GFEKKL+M+GVGYRAA++G +L L LGFSHP ++ IP G+ V V++NT IT+SG+DK  +GQFAA++R  RPPEPY+GKG++Y  E +R+
Sbjct:    2 SRKGKLPISLPNGVEVKVSNTEVAVKGPKGALTQKLIPGVNVNVEGNEVLVSLADEEAKLAHFHGLYRTLIHNMVVGTTEGFEKKLEMIGVGYRAAVQGDLLDLQLGFSHPCKLPIPKGLAVKVDKNTLITISGFDKHLVGQFAATVRSQRPPEPYQGKGIRYAGEFVRK 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_DESAD (50S ribosomal protein L6 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplF PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.007e-43
Identity = 81/170 (47.65%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI++PS V +T+G   + VKGP G ++      V     D+ + V+++ ++R+    HGL R+L  N + GVSKGF K L++VGVGY+  ++G+ +VL++GFSHPV   +P GI+ + E NT++T+SG DK  +G+ AA +R+ RPPEPYKGKG+KY+DE IRR
Sbjct:    2 SRIGKKPIDIPSGVEVTVGADVVSVKGPKGTITTPVHPMVSFTVADNAVEVKRSGDSRQERAQHGLHRSLLANCIEGVSKGFSKTLEVVGVGYKVNVQGKNIVLNVGFSHPVNYELPAGIEASAEGNTKLTISGVDKQLVGEVAAQLRRVRPPEPYKGKGIKYIDEQIRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROMA (50S ribosomal protein L6 OS=Prochlorococcus marinus GN=rplF PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 87/170 (51.18%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI VP  V +TL G  + VKGP GEL+   P  V +D+ D  + V    E R++ + HGL RTL  NM+ GV+ G+ K+L++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT + VSG DK  +G  AA IR  RPPEPYKGKG+KY+ E I R
Sbjct:    2 SRIGKKPIPVPEKVAVTLDGLLVTVKGPKGELTRTLPEGVTIDQTDGLIIVSADSEKRKSRERHGLSRTLVANMIEGVNNGYSKQLEIVGVGSRAQVKGKTLVVSAGYSHPVEVIPPEGITFKVENNTNVLVSGIDKELVGNEAAKIRAIRPPEPYKGKGIKYLGERILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_MOOTA (50S ribosomal protein L6 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplF PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 83/170 (48.82%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+++P+ V + + G  + VKGP G+L+  +P E+ + RE   L+V +  + +    +HGL R L  NMV GV++GFEK L++VGVGYRAA +G  LVLS+G+SHPV M   +G+++ V    ++ V G DK A+G  AA IR  RPPEPYKGKG+KY  E IRR
Sbjct:    2 SRIGKKPVKIPAGVEVNIEGNTVTVKGPKGKLTRQFPAEITISREGEELQVSRPSDAKPHRALHGLSRALLQNMVDGVTRGFEKGLELVGVGYRAAKQGNKLVLSVGYSHPVEMVPGEGLEIEVPAPNKVIVKGIDKEAVGALAAKIRDVRPPEPYKGKGIKYEGEYIRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNP2 (50S ribosomal protein L6 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplF PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.130e-43
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNV-EENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P  VT+TL G ++ VKGP G L    P +V V +ED+ + V     +R A + HGL RTL  NM+ GVS+G+ K+L+++GVGYRA ++G  L L++G+S PV M +P+G+   + E+NT++ +SG DK  +G  AA +R  RPPEPYKGKG++Y  E IRR
Sbjct:    2 SRIGKKPIPIPDKVTVTLNGANVAVKGPKGSLERTLPEKVTVTQEDNTIVVSPVDNSRTARERHGLCRTLVANMIEGVSQGYSKQLEIIGVGYRAQVQGNKLTLNVGYSKPVEMQMPEGVTAAMGEKNTQVIISGIDKEVVGNTAAKVRAVRPPEPYKGKGIRYQGEYIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SALTO (50S ribosomal protein L6 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplF PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.130e-43
Identity = 87/171 (50.88%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG++ I VP+ V +T+ GQ + VKGP GELS      + +DR ED  L V +  + R+A ++HGL RTL  NM+VGV++G+ K L++ G GYR   +G+ L  +LGFSHPV +  P+GI  +VE+ T   V+G +K  +G+ AA+IRK RPPEPYKGKGVKY  EVIRR
Sbjct:    2 SRIGRKSIPVPTGVDVTIAGQTVTVKGPKGELSHTIAEPITIDRAEDGQLNVARPNDERKAKELHGLSRTLVANMIVGVTEGYRKSLEIAGTGYRVTAKGKDLEFALGFSHPVTVVAPEGITFSVEKPTLFHVAGINKQLVGEVAANIRKIRPPEPYKGKGVKYQGEVIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOPB (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplF PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.130e-43
Identity = 87/170 (51.18%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT ++ GQ + +KGP G+L  +   +V+V  E+  + V+  VET RA  ++G  R    N++ GV+KGFEKKL + GVGYRAAL+G+ L L+LG+SH V   IPDGI + V + T I +SG D   +GQ AA IR +RPPEPYKGKGV+Y DE I R
Sbjct:    2 SRVGKKPVVVPSGVTASVQGQIVTMKGPKGQLQFIVHDDVEVQFENGSVTVKPRVETNRARALYGTARAQVANLLEGVTKGFEKKLDITGVGYRAALQGKKLQLALGYSHDVVYDIPDGITITVPKPTEIFISGNDSQRVGQVAAEIRSYRPPEPYKGKGVRYSDEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LISW6 (50S ribosomal protein L6 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplF PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.700e-43
Identity = 80/170 (47.06%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ ++ E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+++ V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRR 171          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_RHOP53.007e-4351.1850S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_PHEZH3.007e-4351.1850S ribosomal protein L6 OS=Phenylobacterium zucin... [more]
RL6_PARUW3.007e-4349.4150S ribosomal protein L6 OS=Protochlamydia amoebop... [more]
RL6_DESAD3.007e-4347.6550S ribosomal protein L6 OS=Desulfovibrio salexige... [more]
RL6_PROMA3.928e-4351.1850S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_MOOTA3.928e-4348.8250S ribosomal protein L6 OS=Moorella thermoacetica... [more]
RL6_SYNP25.130e-4348.5450S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_SALTO5.130e-4350.8850S ribosomal protein L6 OS=Salinispora tropica (s... [more]
RL6_RHOPB5.130e-4351.1850S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_LISW66.700e-4347.0650S ribosomal protein L6 OS=Listeria welshimeri se... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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