EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LISIN (50S ribosomal protein L6 OS=Listeria innocua GN=rplF PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.700e-43
Identity = 80/170 (47.06%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ ++ E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+++ V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RK6_GRATL (50S ribosomal protein L6, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl6 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.700e-43
Identity = 83/170 (48.82%), Postives = 124/170 (72.94%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR--EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVI 521
            SRIGK+PI +P N+ IT+   +++++GP GELS   P+  ++K D +++ L + KT + + A ++HGL RTL +NM++GVS+GFEKKLQ+ GVGYR+ L+G  L+L++G+SH V +  P  I + VE NT IT+ G  K  +G+ AA IR+ RPPEPYKGKG++Y++E I
Sbjct:    2 SRIGKKPINLPQNINITIIENNVQIQGPKGELSYKIPKLIQIKQDTKNNKLFLYKTEDNKEAQKLHGLCRTLINNMIIGVSQGFEKKLQIQGVGYRSQLDGDNLLLNVGYSHTVIVKPPKNIILEVENNTSITIKGIQKEQVGEIAAQIRRIRPPEPYKGKGIRYLNETI 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOCS (50S ribosomal protein L6 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplF PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 88/170 (51.76%), Postives = 119/170 (70.00%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ VP+ VT+T+ GQ+L  KG LG+LSL    ++ V  ED  + V+   ET+RA Q     RTL  N+V GV+ GF K L++ GVGY+AA++G+ LVL+LG+SH +R  IP+GI +  ++ T ++VSG DK  +GQ AA IR +R PEPYKGKGVKY +EVI R
Sbjct:    2 SRIGKHPVPVPAGVTVTVAGQNLTAKGKLGQLSLSLIDDIAVSMEDGKVVVQPRTETKRARQNWATARTLVFNLVKGVNDGFTKNLEINGVGYKAAVQGKDLVLNLGYSHEIRYPIPEGITIKCDKPTSVSVSGTDKQQVGQVAAEIRAFRGPEPYKGKGVKYENEVIIR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CARHZ (50S ribosomal protein L6 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplF PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 83/170 (48.82%), Postives = 118/170 (69.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG++PI VP  V + + G  + VKGP G L+  +  ++K+  + S + V +  + +    +HGL RTL +NM+VGV+ G++K L++VGVGYRAA +G+ LVL++G+SHPV M  P+GI++ V    +I V G DK  +G FAA+IR  R PEPYKGKG+KY DEVIRR
Sbjct:    2 SRIGRKPIPVPQGVEVKVEGTTVTVKGPKGSLTREFHPDMKITFDGSQILVERPSDEKEHKALHGLTRTLINNMIVGVTNGYQKSLELVGVGYRAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKELVGNFAATIRAVREPEPYKGKGIKYTDEVIRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNWW (50S ribosomal protein L6 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplF PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 88/170 (51.76%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V +++    + VKGP G L    P  + V +E + L V++  + ++   MHGL R L  NMV GVS GFEKKL++VGVGYRA ++G+ LV+S+GFSHPV +  P+GI+  V   TRITV G DK  +G  AA IR  R PEPYKGKG+KY +EVIRR
Sbjct:    2 SRIGKKPISLPAGVEVSIKDNAISVKGPKGVLEWALPEGITVVQEGNELVVKRPSDIKQHRAMHGLSRALIANMVQGVSAGFEKKLELVGVGYRAQMQGKKLVISIGFSHPVEVEPPEGIEFEVPAVTRITVKGIDKQLVGNTAAHIRAIRKPEPYKGKGIKYENEVIRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NATTJ (50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 82/170 (48.24%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PIE+P +V I++   ++ VKGP GELS V  + + ++ E+  L V++  ++     +HGL R+L  NMV GV+ GFE+ L++VGVGYRA ++G+ LVL++G+SHPV +  P+G+++ V +N +I V G DK  +GQ AA IR  R PEPYKGKG+KY +E I R
Sbjct:    2 SRIGKKPIEIPDSVDISINNNEVTVKGPKGELSQVVDQSIILEEEEGQLLVKRPTDSNHHKSLHGLSRSLIANMVEGVTNGFERHLEIVGVGYRAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEVVGQVAARIRAVRKPEPYKGKGIKYAEEQIIR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LISMF (50S ribosomal protein L6 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplF PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ ++ E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LISMC (50S ribosomal protein L6 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplF PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 80/170 (47.06%), Postives = 116/170 (68.24%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ ++ E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_METS4 (50S ribosomal protein L6 OS=Methylobacterium sp. (strain 4-46) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 88/170 (51.76%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VP+ VT T+ GQ++K+KG  GELS   P  V+V   D  + V+   +T+ A  M GL R    N++ GV+KGFEKKL++ GVGYRAA+ G+VL LSLG+SH V   IP GI +       I V+G DK  +GQ AA IR++R PEPYKGKGVKY DE I R
Sbjct:    2 SRVGKKPVTVPAGVTATVDGQNVKIKGAKGELSFRVPDLVEVSHADGAISVQPRSQTKEARAMWGLSRAQVANLIEGVTKGFEKKLEINGVGYRAAVAGKVLKLSLGYSHDVEYEIPAGITITTPRPVEIIVAGIDKQRVGQIAAEIREYRGPEPYKGKGVKYSDEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_HERAR (50S ribosomal protein L6 OS=Herminiimonas arsenicoxydans GN=rplF PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 85/168 (50.60%), Postives = 110/168 (65.48%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVI 521
            SR+GK PI +PS    T+  + + VKGPLG LS      V+++     L  +   ++R AN M G  R L +NMV GV+KGFEKKL +VGVG+RAA +G  L LSLGFSHPV   +P GIKV     T I + G D+ ++GQ AA +R +RPPEPYKGKGV+Y DEV+
Sbjct:    2 SRVGKMPIALPSGAEATITAEQITVKGPLGSLSQALNGLVQIENASGTLNFKPANDSREANAMSGTLRALVNNMVNGVTKGFEKKLMLVGVGFRAAAQGDKLNLSLGFSHPVVHAMPAGIKVETPTQTEILIKGIDRQSVGQVAAEVRAYRPPEPYKGKGVRYSDEVV 169          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_LISIN6.700e-4347.0650S ribosomal protein L6 OS=Listeria innocua GN=rp... [more]
RK6_GRATL6.700e-4348.8250S ribosomal protein L6, chloroplastic OS=Gracila... [more]
RL6_RHOCS8.750e-4351.7650S ribosomal protein L6 OS=Rhodospirillum centenu... [more]
RL6_CARHZ8.750e-4348.8250S ribosomal protein L6 OS=Carboxydothermus hydro... [more]
RL6_SYNWW1.143e-4251.7650S ribosomal protein L6 OS=Syntrophomonas wolfei ... [more]
RL6_NATTJ1.143e-4248.2450S ribosomal protein L6 OS=Natranaerobius thermop... [more]
RL6_LISMF1.143e-4247.0650S ribosomal protein L6 OS=Listeria monocytogenes... [more]
RL6_LISMC1.143e-4247.0650S ribosomal protein L6 OS=Listeria monocytogenes... [more]
RL6_METS41.493e-4251.7650S ribosomal protein L6 OS=Methylobacterium sp. (... [more]
RL6_HERAR1.493e-4250.6050S ribosomal protein L6 OS=Herminiimonas arsenico... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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