EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CAUSK (50S ribosomal protein L6 OS=Caulobacter sp. (strain K31) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 86/170 (50.59%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ + +PS V ITL GQ + VKGP G+LS     E+ + +E S L +    +++RA  M GL RTL  NMV GV+ GFE+ L++VGVGYRAA++G  L + LGFSH V +  P G+   V + T I ++G DK A+G+ AA IR+ RPPEPYKGKGV+Y  E +RR
Sbjct:    2 SRIGKKAVAIPSGVNITLDGQTVTVKGPKGQLSWTIAEEITISQEGSDLLLVARDDSKRAKSMWGLSRTLVANMVQGVTTGFEETLELVGVGYRAAMKGDALSIQLGFSHDVNVEAPAGVTFAVPKQTEIKIAGADKQAVGEIAAKIRRIRPPEPYKGKGVRYAGEKVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNPX (50S ribosomal protein L6 OS=Synechococcus sp. (strain WH8102) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 85/170 (50.00%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ VP  VT++L G  +KVKGP GEL    P  V V ++++ + V  +   R + + HGL RTL  NM+ GV+ G+ K L++VGVG RA ++G+ LV+S G+SHPV M  P+GI   VE NT++ VSG DK  +G  AA +R  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKNPVPVPDKVTVSLDGLTVKVKGPKGELERTLPDGVSVSQDNNCIVVAPSTSKRFSRERHGLCRTLVANMIEGVNNGYSKSLEIVGVGSRAQVKGKTLVVSAGYSHPVEMEPPEGITFKVENNTKVIVSGIDKELVGNEAAKVRAIRPPEPYKGKGIKYEGERIMR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROMT (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain NATL2A) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 85/170 (50.00%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR GK+PI +P  V +   G  + VKGP GEL    P  V + ++++F+ V+   E R++ +MHGL R+L  NMV GVS GF KKL++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT + V+G DK  +G  AA IR  RPPEPYKGKG+KY  E+I R
Sbjct:    2 SRTGKKPISLPEKVDVKFEGLSITVKGPKGELKRTLPNGVSLSKDENFIFVKPINEKRQSREMHGLCRSLVANMVEGVSNGFTKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFKVENNTNVIVTGPDKELVGNEAAKIRAIRPPEPYKGKGIKYQGELIIR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PROM1 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain NATL1A) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 85/170 (50.00%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR GK+PI +P  V +   G  + VKGP GEL    P  V + ++++F+ V+   E R++ +MHGL R+L  NMV GVS GF KKL++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT + V+G DK  +G  AA IR  RPPEPYKGKG+KY  E+I R
Sbjct:    2 SRTGKKPISLPEKVDVKFEGLSITVKGPKGELQRTLPNGVSLSKDENFIFVKPINEKRQSREMHGLCRSLVANMVEGVSNGFTKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFKVENNTNVIVTGPDKELVGNEAAKIRAIRPPEPYKGKGIKYQGELIIR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LISMO (50S ribosomal protein L6 OS=Listeria monocytogenes GN=rplF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 80/170 (47.06%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ +  E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LISMH (50S ribosomal protein L6 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 80/170 (47.06%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ +  E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+IR  RPPEPYKGKG++Y  E +RR
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_IDILO (50S ribosomal protein L6 OS=Idiomarina loihiensis GN=rplF PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 84/170 (49.41%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+ K PIE+P+ V +TL GQ++ +KG  G LS V    V++ +++S LR         +    G  R L  NMVVGV+KGFE+KLQ++GVGYRA  +G+ L L+LGFSHPV   IP+GI ++    T + V G DK  +GQ AA+IR +R PEPYKGKGV+Y DE +RR
Sbjct:    2 SRVAKAPIEIPAGVEVTLNGQEVTIKGAQGSLSRVVNDAVELVKDESELRTNAREGVANSTAQAGTARALLQNMVVGVTKGFERKLQLIGVGYRAQAQGKKLNLTLGFSHPVEFEIPEGITIDTPTQTEVVVKGADKQLVGQVAANIRAYRKPEPYKGKGVRYADEQVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_RHOE4 (50S ribosomal protein L6 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 85/171 (49.71%), Postives = 119/171 (69.59%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ VP+ V +T+ GQD+ VKGP G L+L     + +++ ED  L V +  + RR+  +HGL RTL  N++ GV++G+ KK+++ GVGYR AL+G+ L  +LGFSHPV +  P+GI   VE  TR +VSG DK  +GQ +A+IR+ R P+PYKGKGV+Y  E IRR
Sbjct:    2 SRIGKIPVTVPAGVDVTISGQDVTVKGPKGTLALTISEPIAIEKAEDGSLSVTRPDDERRSRALHGLSRTLVANIITGVTEGYTKKMEIHGVGYRVALKGKDLEFALGFSHPVPIEAPEGITFVVESPTRFSVSGIDKQKVGQISANIRRLRRPDPYKGKGVRYEGEQIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_METNO (50S ribosomal protein L6 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplF PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 87/170 (51.18%), Postives = 113/170 (66.47%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VP+ VT T+ GQ +KVKG  GEL    P +V V  E+  + V+   +T+ A  + GL R    N+V GV+KGFEKKL++ GVGYRAA+ G+VL LSLG+SH +   IP GI +       I V+G DK  +GQ AA IR++R PEPYKGKGVKY DE I R
Sbjct:    2 SRVGKKPVPVPAGVTATVDGQTVKVKGSKGELQFRVPDQVAVTHENGAISVQPRSQTKEARALWGLSRAQVANLVEGVTKGFEKKLEINGVGYRAAVAGKVLKLSLGYSHDIEYEIPAGITITTPRPVEIIVAGIDKQRVGQIAAEIREYRSPEPYKGKGVKYADEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BARHE (50S ribosomal protein L6 OS=Bartonella henselae GN=rplF PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 88/170 (51.76%), Postives = 118/170 (69.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI VPS VT T+ GQ +K KGP GELS +   EV V  E+SF+ V    +++ A    G+ R++ +N+  GV  GFEK+L++ GVGYRAAL+G+ + LSLGFSH V   +P G+ V++ + T I VSG DK  +GQ AA IR++R PEPYKGKG+K+ DE I R
Sbjct:    2 SRIGKKPISVPSGVTATVEGQLVKAKGPKGELSYLVNDEVLVKLEESFISVSPRDQSKDARSKWGMSRSMIENIFCGVKDGFEKRLEINGVGYRAALQGKDIQLSLGFSHDVIYKVPSGVTVSIPKPTEIVVSGIDKQQVGQVAAEIREYRRPEPYKGKGIKHADERIFR 171          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_CAUSK1.493e-4250.5950S ribosomal protein L6 OS=Caulobacter sp. (strai... [more]
RL6_SYNPX1.949e-4250.0050S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_PROMT1.949e-4250.0050S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_PROM11.949e-4250.0050S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_LISMO1.949e-4247.0650S ribosomal protein L6 OS=Listeria monocytogenes... [more]
RL6_LISMH1.949e-4247.0650S ribosomal protein L6 OS=Listeria monocytogenes... [more]
RL6_IDILO1.949e-4249.4150S ribosomal protein L6 OS=Idiomarina loihiensis ... [more]
RL6_RHOE42.546e-4249.7150S ribosomal protein L6 OS=Rhodococcus erythropol... [more]
RL6_METNO2.546e-4251.1850S ribosomal protein L6 OS=Methylobacterium nodul... [more]
RL6_BARHE2.546e-4251.7650S ribosomal protein L6 OS=Bartonella henselae GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
back to top