EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNSC (50S ribosomal protein L6 OS=Synechococcus sp. (strain CC9605) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPR--EVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ VP  VT++L G  +KVKGP GEL    P    V V ++++ + V  T   R + + HGL RTL  NM+ GVS G+ K L++VGVG RA ++G+ LV+S G+SHPV M  P+GI   VE NTR+ VSG DK  +G  AA +R  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKNPVPVPEKVTVSLDGLTVKVKGPKGELERTLPEGVSVSVSQDNNTIVVSPTSTKRISRERHGLSRTLVANMIEGVSNGYSKALEIVGVGSRAQVKGKTLVVSAGYSHPVEMEAPEGITFKVENNTRVIVSGIDKELVGNEAAKVRAIRPPEPYKGKGIKYEGERILR 173          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNS9 (50S ribosomal protein L6 OS=Synechococcus sp. (strain CC9902) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 88/170 (51.76%), Postives = 109/170 (64.12%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK P+ VP  VT++L G  +KVKGP GEL    P  V V +E + + V  T   R + + HGL RTL  NM+ GV  G+ K L++VGVG RA ++G  LV+S G+SHPV M  P GI   VE NTR+ VSG DK  +G  AA +R  RPPEPYKGKG+KY  E I R
Sbjct:    2 SRIGKNPVPVPDKVTVSLDGLTVKVKGPKGELERTLPEGVSVSQEANTIVVAPTSTKRISRERHGLSRTLVANMIEGVHNGYSKALEIVGVGSRAQVKGTTLVVSAGYSHPVEMPAPAGITFKVENNTRVIVSGIDKELVGNEAAKVRAIRPPEPYKGKGIKYEGEHILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_PELPD (50S ribosomal protein L6 OS=Pelobacter propionicus (strain DSM 2379) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK PI++  +V +      L V+GPLG+LS      V ++  DS + V +  E+  A   HGL RTL  NMV GV+KGF+K L++ GVGYRA ++G  LVLSLG+SHPV  TIP G+ + V++ T++ V G+DK  +G+ AA IR +RPPEPYKGKGVKY DE I R
Sbjct:    2 SRIGKLPIDISKDVKLAFSDSILSVQGPLGKLSRRIMPCVNLEITDSCIIVMRNDESGTARSAHGLTRTLVSNMVNGVTKGFQKSLEINGVGYRAEVKGSELVLSLGYSHPVVFTIPAGVTIEVDKLTKVVVKGFDKELVGETAAKIRSFRPPEPYKGKGVKYADETILR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_METEP (50S ribosomal protein L6 OS=Methylobacterium extorquens (strain PA1) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT T+ GQ +KVKG  GEL  V P +V V+ +D  + V+   ++++A  + G  R    N+V GVSKGFEKKL++ GVGYRAA+ G+ L LSLG+SH +   IP GI +   + T I VSG D+  +GQ AA IR++R PEPYKGKGVKY  E I R
Sbjct:    2 SRVGKKPVPVPSGVTATVTGQTVKVKGSKGELQFVVPSQVVVEFKDGAVSVQPKDQSKQARSLWGTSRAQVANLVEGVSKGFEKKLEITGVGYRAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQRVGQVAAEIREYRGPEPYKGKGVKYAGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_METC4 (50S ribosomal protein L6 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK+P+ VPS VT T+ GQ +KVKG  GEL  V P +V V+ +D  + V+   ++++A  + G  R    N+V GVSKGFEKKL++ GVGYRAA+ G+ L LSLG+SH +   IP GI +   + T I VSG D+  +GQ AA IR++R PEPYKGKGVKY  E I R
Sbjct:    2 SRVGKKPVPVPSGVTATVTGQTVKVKGSKGELQFVVPSQVVVEFKDGAVSVQPKDQSKQARSLWGTSRAQVANLVEGVSKGFEKKLEITGVGYRAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQRVGQVAAEIREYRGPEPYKGKGVKYAGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_KINRD (50S ribosomal protein L6 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 89/171 (52.05%), Postives = 115/171 (67.25%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG+ PI VP+ V +T+ G  + VKGP GELS      + V+R ED  L+V +  + R +  +HGL RTL  NMV GV+KG+EKKL++VG GYR   +G  L  +LGFSHPV +  P GI   VE NTR +V+G DK  +G+ AA+IRK R P+PYKGKGV+Y  E IRR
Sbjct:    2 SRIGRLPITVPAGVDVTIDGAAVTVKGPKGELSHTVAAPISVERTEDGTLQVTRPDDERVSRSLHGLTRTLISNMVEGVTKGYEKKLEIVGTGYRVTPKGSDLEFALGFSHPVVVKAPAGITFAVENNTRFSVAGIDKQQVGEIAANIRKLRKPDPYKGKGVRYAGEQIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_DESRM (50S ribosomal protein L6 OS=Desulfotomaculum reducens (strain MI-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 82/170 (48.24%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI VP  V + + G  + VKGP G+L   + +++ +  E+  L V +  + +    +HGL RTL +NMV GV+ GF++ L++VGVGYRAA +G  LVL++G+SHPV +  P GI++ V   T+I + G DK A+GQ AA+IR  R PEPYKGKG+KY +E+IRR
Sbjct:    2 SRIGKKPIPVPQGVDVKINGNVISVKGPKGQLEQEFHQDMNIKLEEGNLVVERPSDAKDHRALHGLTRTLLNNMVEGVTNGFQRNLELVGVGYRAAKQGNKLVLTIGYSHPVEIEPPAGIEIEVPAATKIAIKGSDKQAVGQLAANIRAVREPEPYKGKGIKYENEIIRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CLOBL (50S ribosomal protein L6 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 84/171 (49.12%), Postives = 117/171 (68.42%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK P+ +P+ VT+T+   ++  VKGP GEL+     ++ +  ED+ + V +  + +    +HGL R L +NMV GV++G+ K L++VGVGYRA L+G+ LVLSLGFSHPV M    G++  VE  T++ V G DK  +G  AA IRKWR PEPYKGKG+KY +EVIRR
Sbjct:    2 SRVGKLPVAIPNGVTVTVTPDNVVTVKGPKGELAKAMSNKINIAVEDNSVVVTRDNDHKDVRALHGLTRALINNMVTGVNEGYVKTLELVGVGYRAQLQGKKLVLSLGFSHPVEMEAVSGVEFEVEGGTKVKVKGIDKELVGAVAADIRKWRKPEPYKGKGIKYENEVIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RK6_EMIHU (50S ribosomal protein L6, chloroplastic OS=Emiliania huxleyi GN=rpl6 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 87/172 (50.58%), Postives = 116/172 (67.44%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREV--KVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGKQ I +P  V I L GQ + V GP G+L+ + P  +   +D  +  + + K  E + +  ++GL RTL  NMV GVS G+ KKL + GVGYRA L+G+ L+L++G+SHPV+M  P  + V+VE  T ITVSG +K A+G+FAA IR  RPPEPYKGKG+ Y  EVIRR
Sbjct:    2 SRIGKQYISIPDKVNIRLEGQKVFVDGPKGKLTRILPSFICCTIDEPEKKVFLEKAEENKLSQALYGLSRTLLSNMVTGVSSGWHKKLTIAGVGYRAQLDGKDLILNMGYSHPVKMVTPPALSVSVESPTSITVSGLEKEAVGEFAAKIRSVRPPEPYKGKGIAYEGEVIRR 173          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_THERP (50S ribosomal protein L6 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.343e-42
Identity = 88/171 (51.46%), Postives = 121/171 (70.76%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V + L   ++ +V GP G+L L    ++ V RE+  ++V++  + R   Q+HGL+RTL  NMV GV++GF K L++ GVGYRAALEG+ LVL++G+SHPVR+  P GI   VE  TRI V G DK  +G+ AA IR+ RPPEPY+GKG++Y  EVIRR
Sbjct:    2 SRIGKRPIPIPAGVQVELTPDNVVRVTGPKGQLELRLHPKMIVQRENGVVQVQRPSDERFFKQLHGLYRTLIANMVQGVTEGFRKDLEIHGVGYRAALEGKTLVLTVGYSHPVRIDPPPGISFIVESPTRIGVVGIDKQLVGEVAAQIRRVRPPEPYQGKGIRYAGEVIRR 172          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_SYNSC3.325e-4251.1650S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_SYNS93.325e-4251.7650S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_PELPD3.325e-4251.1850S ribosomal protein L6 OS=Pelobacter propionicus... [more]
RL6_METEP3.325e-4251.1850S ribosomal protein L6 OS=Methylobacterium extor... [more]
RL6_METC43.325e-4251.1850S ribosomal protein L6 OS=Methylobacterium chlor... [more]
RL6_KINRD3.325e-4252.0550S ribosomal protein L6 OS=Kineococcus radiotoler... [more]
RL6_DESRM3.325e-4248.2450S ribosomal protein L6 OS=Desulfotomaculum reduc... [more]
RL6_CLOBL3.325e-4249.1250S ribosomal protein L6 OS=Clostridium botulinum ... [more]
RK6_EMIHU3.325e-4250.5850S ribosomal protein L6, chloroplastic OS=Emilian... [more]
RL6_THERP4.343e-4251.4650S ribosomal protein L6 OS=Thermomicrobium roseum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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