EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_GEOKA (50S ribosomal protein L6 OS=Geobacillus kaustophilus GN=rplF PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.343e-42
Identity = 79/169 (46.75%), Postives = 119/169 (70.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+GK+PIE+P+ VT+T+ G  + VKGP GEL+  +  ++ +  E + + V +  + +    +HG  R+L  NMV GVSKG+EK L++VGVGYRA+ +G+ LVLS+G+SHPV +   +G+++ V   T+I V G DK  +G+ AA+IR  RPPEPYKGKG++Y  E++R
Sbjct:    2 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BACST (50S ribosomal protein L6 OS=Bacillus stearothermophilus GN=rplF PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.343e-42
Identity = 79/169 (46.75%), Postives = 119/169 (70.41%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SR+GK+PIE+P+ VT+T+ G  + VKGP GEL+  +  ++ +  E + + V +  + +    +HG  R+L  NMV GVSKG+EK L++VGVGYRA+ +G+ LVLS+G+SHPV +   +G+++ V   T+I V G DK  +G+ AA+IR  RPPEPYKGKG++Y  E++R
Sbjct:    2 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVR 170          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ZYMMO (50S ribosomal protein L6 OS=Zymomonas mobilis GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 83/170 (48.82%), Postives = 110/170 (64.71%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ +P+ VT  +    L VKGP GELS+    EV    ED  L V+   +T+RA    G+ RTL  N++ GV++G+ K LQ+ GVGYRAA +G+ L L LG+SH +   IP+GI +   E T + +SG DK  +GQ AA IR+WR PEPYKGKG+KY  E I R
Sbjct:    2 SRIGKKPVAIPTGVTANIADGVLSVKGPKGELSMPLSSEVTYSLEDGQLSVQPVNDTKRARSFWGMQRTLVQNLIDGVTQGYSKTLQITGVGYRAASQGKTLKLQLGYSHDIDFAIPEGITIQTPEPTTVNISGIDKQKVGQVAAEIRRWRRPEPYKGKGIKYAGEFIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_MYCS2 (50S ribosomal protein L6 OS=Mycobacterium smegmatis GN=rplF PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 86/171 (50.29%), Postives = 117/171 (68.42%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGKQP+ VPS V +T+ GQ+L VKGP G L+L     + V R ED  + V +  + RR+  +HGL RTL  N+V GV++G+ +K+++ GVGYR  L+GQ L  +LG+SHPV +  P+GI   VE  T+ +VSG DK  +GQ +A IR+ R P+PYKGKGV+Y  E IRR
Sbjct:    2 SRIGKQPVPVPSGVDVTINGQNLSVKGPKGTLTLDVAEPISVSRAEDGAIVVTRPDDERRSRSLHGLSRTLIANLVTGVTEGYTQKMEIFGVGYRVQLKGQNLEFALGYSHPVLIEAPEGITFAVESPTKFSVSGIDKQKVGQISAVIRRLRRPDPYKGKGVRYEGEQIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_LEIXX (50S ribosomal protein L6 OS=Leifsonia xyli subsp. xyli GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 84/170 (49.41%), Postives = 117/170 (68.82%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG+ PI+VP+ V + + GQ + VKGP GELSL     ++V  E+  + V +  + R +  +HGL RTL +N +VGV++G+ K L++VG GYR A +G  +  +LGFSHPV +  P GI   VE N ++TV+G DK A+G+ AA+IRK R PEPYKGKGV+Y  EV+RR
Sbjct:    2 SRIGRLPIDVPAGVDVKIDGQAVTVKGPKGELSLTVASPIEVKLEEGQVLVTRPDDERESRSLHGLTRTLLNNNIVGVTQGYSKGLEIVGTGYRVAQKGAGVEFALGFSHPVTVEPPAGITFTVEGNNKLTVAGIDKQAVGEVAANIRKIRKPEPYKGKGVRYAGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_FRASN (50S ribosomal protein L6 OS=Frankia sp. (strain EAN1pec) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 86/170 (50.59%), Postives = 111/170 (65.29%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIG+QPI VP+ V I+L G  + +KGP G LS      ++V RED  L V +  + RR+  +HGL RTL  NMVVGV+ G+ K L++VGVGYR    G  L  +LG+SHPV +  PDGI+  V+  TR  V G DK  +G+ AA IR  R P+PYKGKGV+Y  EV+RR
Sbjct:    2 SRIGRQPISVPTGVEISLDGPKVTIKGPKGSLSHTVAEPIEVVREDGQLIVNRPNDERRSRALHGLTRTLVSNMVVGVTAGYSKTLEIVGVGYRVQARGSDLEFALGYSHPVPVKAPDGIRFEVQTPTRFVVHGIDKQQVGEVAAKIRGLRKPDPYKGKGVRYQGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CLOPS (50S ribosomal protein L6 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK PI +P+ VT+T+  +++  VKGP GEL     +++ +  ED+ + V +  + +    +HGL R L +NMVVGVS+GF K L++ GVGYRA L+G+ LV++LG+SHPV +   DG+   ++  T++ V G DK  +G  AA+IR WR PEPYKGKG+KY DEVIRR
Sbjct:    2 SRVGKMPIAIPAGVTVTVTPENVVTVKGPKGELVKAMHKDINIAVEDAQVVVTRPSDVKEHRALHGLTRALLNNMVVGVSQGFSKTLELNGVGYRAQLQGKKLVMNLGYSHPVEVEAVDGVDFKLDGTTKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CLOPE (50S ribosomal protein L6 OS=Clostridium perfringens GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK PI +P+ VT+T+  +++  VKGP GEL     +++ +  ED+ + V +  + +    +HGL R L +NMVVGVS+GF K L++ GVGYRA L+G+ LV++LG+SHPV +   DG+   ++  T++ V G DK  +G  AA+IR WR PEPYKGKG+KY DEVIRR
Sbjct:    2 SRVGKMPIAIPAGVTVTVTPENVVTVKGPKGELVKAMHKDINIAVEDAQVVVTRPSDVKEHRALHGLTRALLNNMVVGVSQGFSKTLELNGVGYRAQLQGKKLVMNLGYSHPVEVEAVDGVDFKLDGTTKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CLOP1 (50S ribosomal protein L6 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SR+GK PI +P+ VT+T+  +++  VKGP GEL     +++ +  ED+ + V +  + +    +HGL R L +NMVVGVS+GF K L++ GVGYRA L+G+ LV++LG+SHPV +   DG+   ++  T++ V G DK  +G  AA+IR WR PEPYKGKG+KY DEVIRR
Sbjct:    2 SRVGKMPIAIPAGVTVTVTPENVVTVKGPKGELVKAMHKDINIAVEDAQVVVTRPSDVKEHRALHGLTRALLNNMVVGVSQGFSKTLELNGVGYRAQLQGKKLVMNLGYSHPVEVEAVDGVDFKLDGTTKVIVEGIDKEKVGAVAANIRSWRKPEPYKGKGIKYSDEVIRR 172          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_BRUME (50S ribosomal protein L6 OS=Brucella melitensis GN=rplF PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.672e-42
Identity = 91/170 (53.53%), Postives = 114/170 (67.06%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VP+ VT ++ GQ +K KG  GELS V   EV V  ED  +RV    ++R A    G+ RT+  N+ VGV  GFEKKL++ GVGYRAA++G+ L LSLGFSH V   +P GI V V + T I V+G DK  +GQ AA IR++R PEPYKGKGVKY  E I R
Sbjct:    2 SRIGKKPVPVPAGVTASVEGQTVKAKGAKGELSFVVHDEVLVKMEDGAVRVDPRDQSREARSKWGMSRTMISNIFVGVKDGFEKKLEISGVGYRAAMQGKNLQLSLGFSHEVVYDVPAGITVAVPKPTEIVVTGIDKQQVGQVAAEIREYRGPEPYKGKGVKYAGEKIVR 171          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_GEOKA4.343e-4246.7550S ribosomal protein L6 OS=Geobacillus kaustophil... [more]
RL6_BACST4.343e-4246.7550S ribosomal protein L6 OS=Bacillus stearothermop... [more]
RL6_ZYMMO5.672e-4248.8250S ribosomal protein L6 OS=Zymomonas mobilis GN=r... [more]
RL6_MYCS25.672e-4250.2950S ribosomal protein L6 OS=Mycobacterium smegmati... [more]
RL6_LEIXX5.672e-4249.4150S ribosomal protein L6 OS=Leifsonia xyli subsp. ... [more]
RL6_FRASN5.672e-4250.5950S ribosomal protein L6 OS=Frankia sp. (strain EA... [more]
RL6_CLOPS5.672e-4247.9550S ribosomal protein L6 OS=Clostridium perfringen... [more]
RL6_CLOPE5.672e-4247.9550S ribosomal protein L6 OS=Clostridium perfringen... [more]
RL6_CLOP15.672e-4247.9550S ribosomal protein L6 OS=Clostridium perfringen... [more]
RL6_BRUME5.672e-4253.5350S ribosomal protein L6 OS=Brucella melitensis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
back to top