EY711075

Overview
NameEY711075
Unique NameEY711075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711075 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.815e-11
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  464 RVLDDNGELIKGSDFQ-QVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKL 826
            R++ + GE +   DF   +  E   ++Y  M+  +++D       R G+ SF     G EA  +  A A+    D++ P YR+ G+ L  G  L++   Q+ A KAD  KGRQMP H GSK L
Sbjct:   17 RLIGEEGEWL--GDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKAL 137          

HSP 2 Score: 22.3274 bits (46), Expect = 6.815e-11
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  829 YITISSPIATHFP 867
            + T++SPIA+H P
Sbjct:  139 FFTVASPIASHVP 151          
BLAST of EY711075 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 36/121 (29.75%), Postives = 59/121 (48.76%), Query Frame = 2
Query:  440 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMP 802
            ++ +    ++LD++G ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL ++DFILP YR+   ++W G  L       F       KG Q P
Sbjct:   18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQFP 134          
BLAST of EY711075 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 36/121 (29.75%), Postives = 59/121 (48.76%), Query Frame = 2
Query:  440 SEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMP 802
            ++ +    ++LD++G ++       ++ E  V++   MV  +++D       RQGR  FY  T G+EA  + S  AL ++DFILP YR+   ++W G  L       F       KG Q P
Sbjct:   18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPL----TDAFLFSRGHFKGNQFP 134          
The following BLAST results are available for this feature:
BLAST of EY711075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ODBA_THET86.815e-1134.152-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_STAES7.457e-1129.75Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ7.457e-1129.75Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711075 ID=EY711075; Name=EY711075; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCGCCCGTCAGTGCAAGGTACTGATTCCATCAAAAGCCTCGC
TGGCTACAAATCCCACCATCATTTTCTTCCTTCTTTCTTACCTTCGTATC
TTTGCCGTTGTTCAATATCGAAAAAATTAAATGGCGATTTGGTTAACAAA
ATCAAGAGCCATGGCCCAATGCTTACGGCAAAGAGTTGGTTTGCTGAGGA
TATTAAGTGGCCAGAGTTGTTCATCCCCATCAACAATAATATTCCCACTT
CAGCAATATAATTCATCATCACTTCCAAGCAAAACCCTTTTCTCGCCGGG
GCGTTCCGAGTCCACCGTTGCTTCCAATCAGCTGGATTCTTTGTCTTCCA
GTGACAGCGATGATGATCATCATCAGGTCTTGGATTTTCCCGGAGGCAAA
GTTGGATATACTTCTGAAATGAGGTTCATTCCTGAGTCTTCAGAGAAAAG
AGTGCCTTGTTTTCGAGTTCTTGATGACAATGGAGAGCTAATCAAGGGCA
GTGATTTTCAACAGGTGAGCAAGGAAGTTGCTGTAAAGATGTATAGCCAT
ATGGTCACACTGCAGGTAATGGACTCTGTATTGTACGAAGCACAAAGGCA
AGGGAGATTTTCTTTCTATCTTACAACAATTGGTGAAGAAGCAATCAACA
TAGGATCAGCAGCTGCACTCAGCGCCGATGATTTTATCTTGCCTCAGTAC
CGAGAGCCTGGAGTACTCTTATGGCGTGGCTACACATTGCAACAATTTGC
AAACCAGGTGTTTGCAAACAAGGCTGATGATGGGAAAGGCAGACAGATGC
CAATTCATTATGGGTCTAAAAAGCTTACTACATCACCATATCGTCACCTA
TCGCTACACACTTCCCTCAGCTGNNTGTGTGGCTATTTCTCTAAATGGA
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