EY720140 | Citrus Genome Database

Overview


Name	EY720140
Unique Name	EY720140
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	863

Libraries


Library Name	Type
Sweet orange fruit, development stadium (4 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.907e-33
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3

Query:  207 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 140.198 bits (352), Expect = 1.443e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 3

Query:  435 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.352e-32
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = 3

Query:  207 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 135.191 bits (339), Expect = 4.641e-31
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 3

Query:  435 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPD QRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 3

Query:  207 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 122.865 bits (307), Expect = 2.384e-27
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 3

Query:  435 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P D QRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.113e-27
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 3

Query:  207 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 120.168 bits (300), Expect = 1.545e-26
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 3

Query:  435 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P D QRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.183e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 3

Query:  240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 428
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 118.242 bits (295), Expect = 5.871e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 3

Query:  468 TITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 656
            TITLEVE SDTI+NVKAKIQDKEGIPPD QRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.822e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 3

Query:  213 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 97.0561 bits (240), Expect = 1.401e-19
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 3

Query:  441 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            I VKTLTGK I +++E +DTID VK ++++KEGIPP  QRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3

Query:  213 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 3

Query:  441 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            I VKTLTGK I +++E +DTID +K ++++KEGIPP  QRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3

Query:  213 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 3

Query:  441 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            I VKTLTGK I +++E +DTID +K ++++KEGIPP  QRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 3

Query:  213 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 434
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 3

Query:  441 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 662
            I VKTLTGK I +++E +DTID +K ++++KEGIPP  QRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

[Close]

BLAST of EY720140 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 3

Query:  207 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 443
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 2 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 3

Query:  435 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDXQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 671
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP  QRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

The following BLAST results are available for this feature:

BLAST of EY720140 vs. ExPASy Swiss-Prot

BLAST of EY720140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_LEIMA	2.907e-33	93.42	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	9.352e-32	90.79	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	4.803e-28	80.26	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	3.113e-27	76.32	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	1.183e-26	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_DESAN	2.822e-20	64.86	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB2_ORYSJ	3.686e-20	63.51	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	3.686e-20	63.51	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	3.686e-20	63.51	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DROME	3.686e-20	58.23	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-703-002-F03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY720140 ID=EY720140; Name=EY720140; organism=Citrus sinensis; type=EST; length=863bp
CCACGCGTCCGGATTATATTAAACCAATAAAAAAAAAAAAGAAACAAAAA
AGATATTTAGTTTAGATACCGAGGCTCCCAATCTCAGCCTTCCAACGTAA
GTAATTAGTAACTACATTCTTAATCATTATCCTTGTTCTGGTCTTGATTA
GTGTTGTTGATTTAGTTAATTAAAATTAACTTATTTGCTTTGATTACGAT
TAACAGATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCT
CGAGGTGGAGAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGG
ACAAGGAAGGGATTCCACCGGACCAGCAGCGGCTGATCTTCGCCGGAAAG
CAGCTCGAGGACGGGCGCACCTTGGCGGATTACAACATCCAGAAGGAGTC
GACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCAGATCTTCGTCA
AGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACG
ATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGGATCCCCCCGGA
CCANCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCC
TGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGC
CTGAGGGGAGGAATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGAT
CACCCGGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGGCCAGA
TCCAGGACAAGAGGGGATTCTTCGGACCAGCAGAGTTCATCCTTCGCGGC
ATCAGCTCGAGGATGGCGGGATCTCGCGATTAAACATTAAAAGGAGTCAC
TCTCCACTGGTCT