EY711063

Overview
NameEY711063
Unique NameEY711063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 35/84 (41.67%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            ++++T++ F   V+ +  PVLV+F A WCGPCR+V+P V+ +A+EY   + VVKI+ D NP +  EY +  +PTL++ + G+ V
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERV 86          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  276 VRCGASSGITEI---TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            V C AS  + E+    +S +   VL+SE PV+V+F A WCGPC+L+AP ++ LA+EY  ++ V K++ D  P +  +Y +  +PT++  +NG+   +    GA+ K  L + I+  L
Sbjct:   65 VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGER--KESIIGAVPKSTLTDSIEKYL 179          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  309 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            +T++ F   V KS+ PV+V+F A WCGPCR + PA+E L++EY  ++ +VK++ D NP+      V G+P L L +NGQ V  S + GA  K  L  +I + L
Sbjct:    6 VTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVV--SNKVGAAPKAALATWIASAL 106          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            I E+T+  F   VL+ +  VLV+F A WC PC+++AP +E +AQEY +++ V K++ + NP     Y + G+P L+L  +G+EV  + + GAI+KL+LK+++D
Sbjct:    4 IIELTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLF-HGREV-LATKVGAISKLQLKDFLD 104          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 38/103 (36.89%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            I E+T+  F   VL S+   LV+F A WC PC+++AP +E +++EY +++ V K++ + NP     Y +  +PTL+L  N + +  + + GA++KL+LKE++D
Sbjct:    4 IIELTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVL--ATKVGAVSKLELKEFLD 104          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.227e-15
Identity = 32/83 (38.55%), Postives = 60/83 (72.29%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQE 548
            +  +T+S F N VL+S+ PV+V+F A WCGPC+++ P ++ +++E  D++ V+K++ D NP+   EY +  +PT++L +NG++
Sbjct:    2 VNNVTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQ 84          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQ 545
            S  I  +T+  F + VLKS  PVLV++ A+WCGPC+++AP ++ +A EY  R+ V K++ D NP     Y + G+PTL+L +  +
Sbjct:    2 SDSIVHVTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSE 86          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.570e-15
Identity = 36/103 (34.95%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            +  +T+  F N VL+S+ PV+V+F A WCGPC+++ P ++ +++E  D++ V+K++ D NP+   EY V  +PT++L +NG++  +  + G   K  L ++I+
Sbjct:    2 VNNVTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQ--KDTKIGLQQKKSLLDWIN 102          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.090e-15
Identity = 48/141 (34.04%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  216 SRTNLSLKSYNNSLPKLAIRVRCGA---SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLESIS 629
            +R +LS  S N+ + +L   V C A   ++GI  + +S + + VLK++ PV V+F A WCGPC+++ P V  LAQ+Y  +    K++ D +P    +Y V  +PT+++  NG++  +    GA++K       DTL  SI+
Sbjct:   45 TRVSLSSLSKNSRVSRLRRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEK--KDTIIGAVSK-------DTLATSIN 176          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.090e-15
Identity = 37/105 (35.24%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  294 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            S +  I +++F + V+ S+ P+L++F A WCGPC+++AP ++ LA E+  ++ +VK++ D N     ++ V  +PTL+L +NGQ V  + + GA+ K +L  +I+
Sbjct:    2 SEVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQVV--ATQVGALPKTQLANFIN 104          
The following BLAST results are available for this feature:
BLAST of EY711063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_PORYE7.194e-1641.67Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
TRXM_SPIOL9.395e-1635.90Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_RHOSH9.395e-1641.75Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_BUCAP9.395e-1640.78Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO_BUCAI9.395e-1636.89Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]
THIO_RICPR1.227e-1538.55Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_THIRO2.093e-1541.18Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_RICTY3.570e-1534.95Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
TRXM1_ARATH6.090e-1534.04Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]
THIO_HAEIN6.090e-1535.24Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711063 ID=EY711063; Name=EY711063; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGACAATTCAAAAAGAAAAGAAAATGCTCTAAAAATCTTTA
ATCACTTGCAAAATGGATATCGTCTTCTCCAACTCCACTTTATTGTTCAG
ACAACAACCACTGGTTGCTCCTGTTCGTACAGTTACTGGGACCCACAGGC
AACAGAACATCATCACCAGCGCTACAACAACAACAACGTCGTCAAAGAAT
CAGCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAAGTCTTATAATAA
TTCGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTGCTAGCAGTGGCA
TAACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAG
CGTCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTT
GGTTGCTCCCGCCGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGA
CTGTCGTAAAGATTGATCATGACGCAAACCCACAACTAATAGAGGAATAC
AAAGTTTATGGATTGCCGACCTTGATTCTCTTNCAGAATGGACAGGAAGT
TCCGGAAAGCANGAGGGAAGGTGCAATTACTAAGTTGAAGCTTAAAGAGT
ATATTGATACTCTTTTAGAATCAATCTCAGTGGCTTTAGCCCTCTTTTGA
CATGCTCAGCAAATTATGCTCGTTCTTTCACAGATTTTGACATCATTGGC
AAAGACGAATATGGGTAAATATTTACTTTTTCCNTATGNAAATCTGNNNA
TCATCGTACAGNATCCGTGGATGNNATCAATGNATAAATTTGATCTATGT
ACCAAGATATCATACCTAATTTCTGATATCCAACGGGCACATTGGNTTTT
CAAAAAAAAAAAAAA
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