EY711063

Overview
NameEY711063
Unique NameEY711063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.039e-14
Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  195 KNQLLFGSRTNLSLKSYNNSLPKLAIRVR-------CGASSGITEIT---ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLES 623
            K++LL G   NL L S     P    RV        C + + + E+    E  +   V+  E PVLVEF A WCGPCR++AP ++ LA++Y  ++T  K++ D +P +   Y +  +PT+++ + G++  +    GA+ K  L   ID  + S
Sbjct:   19 KDRLLVG---NLVLPSKRALAPLSVGRVATRRPRHVCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEK--KESVIGAVPKSTLTTLIDKYIGS 166          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 53/187 (28.34%), Postives = 96/187 (51.34%), Query Frame = 3
Query:   78 SNSTLLFRQQPLVAPVRTVTGTHRQQNIIXXXXXXXXXXKNQLLFGSRTNLSLKSYNNSLPKLAIR---VRCGA---SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLE 620
            S+  +  R + ++A  +TV+ + RQ   +                G RT +SL S + +     +R   + C A   ++GI  + +S + + VLK++ PV+V+F A WCGPC+++ P V  LAQ+Y  ++   K++ D +P    +Y V  +PT+++   G++  +    GA+ K  L   ID  L+
Sbjct:    8 SSPPISLRSEMMIASSKTVSLSTRQMFSVG---------------GLRTRVSLSSVSKNSRASRLRRGGIICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEK--KDTIIGAVPKTTLATSIDKFLQ 177          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14
Identity = 43/137 (31.39%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  204 LLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTL 614
            L F  R +L     ++S  +L +   C   S   E+T+  + ++VLKSE PVLVEF  +WCGPCR+V   ++ +A +Y  +L    ++ D +  + EEY++  +P ++L +NG++     RE  +  +  + YI  +
Sbjct:   40 LRFSDRRSL----LSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEK-----RESIMGTMPKEFYISAI 167          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            +  +T+  F   VLKSE+PVLV+F A WCGPCR +AP++E +  E+G ++ +VK++ D NP    +Y V  +PTL + Q G+ V
Sbjct:    5 LKNVTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVV 87          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 31/80 (38.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  309 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQE 548
            +T+S F   VL+S+ PVLV+F A WCGPC+++ P ++ +++E   ++ V+K++ D NP +  EY +  +PT++L +NG++
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQ 84          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 35/100 (35.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  306 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYI 605
            ++  S F + VL+S  PV+V+F A WCGPC+++APA++ +A E   ++ + K++ D NP+L  ++ V  +PTL++ ++G+    +   GA  K +L ++I
Sbjct:    4 KVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELA--ANMVGAAPKSRLADWI 101          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14
Identity = 36/107 (33.64%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  288 ASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            A + +  + +S +   V+ SE PVLV+F A WCGPCR++AP ++ LA+EY  ++   K++ D +P    +Y +  +PT++  +NG+   +    GA+ K  L E ++
Sbjct:   65 AVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGER--KDSVIGAVPKATLSEKVE 169          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_RICBR (Thioredoxin OS=Rickettsia bellii (strain RML369-C) GN=trxA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14
Identity = 35/102 (34.31%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  303 TEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            + +T+  F   VLKS+ PVLV+F A WC PCR++ P +E ++++   ++ V+K++ D NP++  +Y +  +PT++L +NG++  +  + G   K  L E+I+
Sbjct:    3 SNVTDKSFEEEVLKSDLPVLVDFWAEWCSPCRMLTPIIEEISKDLESKVKVLKMNIDENPEIPSKYGIRSIPTVMLFKNGEQ--KDTKVGLHQKNSLIEWIN 102          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 34/101 (33.66%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  306 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            E T+  F   +L S++ VLV+F A+WCGPC ++ P +E LA +Y  +  + K++ D NP +  +Y +  +PT+++ + G+ V +    GA+ K  + + ID
Sbjct:    6 EATDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMV--GALPKNMIAKKID 104          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.733e-14
Identity = 32/83 (38.55%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  309 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPE 557
            +T++ F   + + ++PVLV+F A WCGPCR++AP +E  A+ + D++TV K++ D NP+   ++ +  +PTLIL + G+ V +
Sbjct:    5 LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQ 86          
The following BLAST results are available for this feature:
BLAST of EY711063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
TRXM_MAIZE1.039e-1432.03Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_BRANA1.357e-1428.34Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM3_ARATH1.772e-1431.39Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
THIO_STRCL1.772e-1444.05Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_RICFE2.314e-1438.75Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]
THIO1_CORNE2.314e-1435.00Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
TRXM_PEA3.022e-1433.64Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
THIO_RICBR3.022e-1434.31Thioredoxin OS=Rickettsia bellii (strain RML369-C)... [more]
THIO_CHLLT6.733e-1433.66Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_ALIAC6.733e-1438.55Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711063 ID=EY711063; Name=EY711063; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGACAATTCAAAAAGAAAAGAAAATGCTCTAAAAATCTTTA
ATCACTTGCAAAATGGATATCGTCTTCTCCAACTCCACTTTATTGTTCAG
ACAACAACCACTGGTTGCTCCTGTTCGTACAGTTACTGGGACCCACAGGC
AACAGAACATCATCACCAGCGCTACAACAACAACAACGTCGTCAAAGAAT
CAGCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAAGTCTTATAATAA
TTCGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTGCTAGCAGTGGCA
TAACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAG
CGTCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTT
GGTTGCTCCCGCCGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGA
CTGTCGTAAAGATTGATCATGACGCAAACCCACAACTAATAGAGGAATAC
AAAGTTTATGGATTGCCGACCTTGATTCTCTTNCAGAATGGACAGGAAGT
TCCGGAAAGCANGAGGGAAGGTGCAATTACTAAGTTGAAGCTTAAAGAGT
ATATTGATACTCTTTTAGAATCAATCTCAGTGGCTTTAGCCCTCTTTTGA
CATGCTCAGCAAATTATGCTCGTTCTTTCACAGATTTTGACATCATTGGC
AAAGACGAATATGGGTAAATATTTACTTTTTCCNTATGNAAATCTGNNNA
TCATCGTACAGNATCCGTGGATGNNATCAATGNATAAATTTGATCTATGT
ACCAAGATATCATACCTAATTTCTGATATCCAACGGGCACATTGGNTTTT
CAAAAAAAAAAAAAA
back to top