EY711063

Overview
NameEY711063
Unique NameEY711063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  309 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            I E  F N VL+SE+ VLV+F A WCGPCR++ P +E +A+E+   L VV+++ D NP L   Y +  +PTL+L + GQ V
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEF--NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRV 82          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            S+ I   T+  F   VL +E PVLV+F A WC PC+ +AP +E L+ EY  ++ +VK+D  +      +Y +  +P L++ ++G+ V +  + GA  + KL  +ID
Sbjct:    2 SATIVNTTDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGEVVAQ--QVGAAPRSKLAAFID 105          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.959e-13
Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  288 ASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            A+  +  +++SE+   VL+S+ PVLVEF A WCGPCR++ P V+ LA+++  +    KI+ D +P     Y +  +PT+I+ + G++  +    GA+ +  L++ I+  L
Sbjct:   84 AAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEK--KDSIIGAVPRETLEKTIERFL 191          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.559e-13
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 3
Query:  213 GSRTNLSLKSYNNSLPKLAI--------------------RVRCGASSGITEIT---ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLES 623
            G R  LS  SY  S P+ A                     R  C   + + E+    E  + N V+  E PVLVEF A WCGPCR++AP ++ LA++Y  ++   K++ D  P +   Y +  +PT+++ ++G++  +    GA+ K  L   ID  + S
Sbjct:   18 GIRERLSSGSYAPSRPRTAAPAVVSPSPYKSALVAARRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEK--KESVIGAVPKTTLCTIIDKYIGS 175          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_RICCN (Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.559e-13
Identity = 30/80 (37.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:  309 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQE 548
            + +S F   VL+S+ PVLV+F A WCGPC+++ P ++ +++E   ++ V+K++ D NP    EY +  +PT++L +NG++
Sbjct:    5 VMDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELQGKVKVLKMNIDENPNTPSEYGIRSIPTIMLFKNGEQ 84          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_PASMU (Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 37/99 (37.37%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  312 TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            T++ F   V+ S+ PVL++F A WCGPCR+++P ++ +A E+  ++ VVKI+ D N     +  V  +PTL+L +NG+ V  + + GA+ K +L  +I+
Sbjct:    7 TDATFTADVVNSDVPVLLDFWAPWCGPCRMISPILDEIAAEFSGKVKVVKINIDENQATPAQLGVRSIPTLVLFKNGKAV--ATQVGALPKNQLANFIN 103          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO3_CORNE (Thioredoxin C-3 OS=Corynebacterium nephridii PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 42/126 (33.33%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  261 KLAIRVRCGASSGIT------EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLE 620
            KLA+   CG            E+ E  F N +  S+ PVL++  A WCGPC+++AP    +A++    +   KID +ANP+L   + V  +PTL+L     EV  +   GA+  L+L++++D  L+
Sbjct:   18 KLAVHPNCGQCHQALLPLEPIELNEQNFSNFISNSDLPVLIDLWAEWCGPCKMMAPHFAQVAKQ-NPYVVFAKIDTEANPRLSAAFNVRSIPTLVLMNKTTEV--ARISGALRTLELQQWLDQQLQ 140          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            I ++T+S+F + +    +  LV+F A WCGPC+++AP +E LA +Y  +  ++K+D D NP    +Y+V  +PTLI+ ++G+ V +    G   K  L E +D
Sbjct:    3 IVKVTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVV--GFQPKENLAEVLD 101          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 37/103 (35.92%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            I ++T+S+F + +    +  LV+F A WCGPC+++AP +E LA +Y  +  ++K+D D NP    +Y+V  +PTLI+ ++G+ V +    G   K  L E +D
Sbjct:    3 IVKVTDSDFDSKIESGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVV--GFQPKENLAEVLD 101          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            I ++T+++F + V    +  LV+F A WCGPC+++AP +E LA +Y  +  ++K+D D NP    +Y+V  +PTLI+ ++GQ V +    G   K  L E +D
Sbjct:    3 IVKVTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVV--GFQPKENLAEVLD 101          
The following BLAST results are available for this feature:
BLAST of EY711063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO_CYAME1.148e-1346.91Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO2_CORNE1.148e-1334.91Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
TRXM4_ARATH1.959e-1333.64Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_WHEAT2.559e-1330.00Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
THIO_RICCN2.559e-1337.50Thioredoxin OS=Rickettsia conorii GN=trxA PE=3 SV=... [more]
THIO_PASMU3.342e-1337.37Thioredoxin OS=Pasteurella multocida GN=trxA PE=3 ... [more]
THIO3_CORNE4.364e-1333.33Thioredoxin C-3 OS=Corynebacterium nephridii PE=3 ... [more]
THIO_STAES5.700e-1335.92Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ5.700e-1335.92Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAAW5.700e-1336.89Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711063 ID=EY711063; Name=EY711063; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGACAATTCAAAAAGAAAAGAAAATGCTCTAAAAATCTTTA
ATCACTTGCAAAATGGATATCGTCTTCTCCAACTCCACTTTATTGTTCAG
ACAACAACCACTGGTTGCTCCTGTTCGTACAGTTACTGGGACCCACAGGC
AACAGAACATCATCACCAGCGCTACAACAACAACAACGTCGTCAAAGAAT
CAGCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAAGTCTTATAATAA
TTCGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTGCTAGCAGTGGCA
TAACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAG
CGTCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTT
GGTTGCTCCCGCCGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGA
CTGTCGTAAAGATTGATCATGACGCAAACCCACAACTAATAGAGGAATAC
AAAGTTTATGGATTGCCGACCTTGATTCTCTTNCAGAATGGACAGGAAGT
TCCGGAAAGCANGAGGGAAGGTGCAATTACTAAGTTGAAGCTTAAAGAGT
ATATTGATACTCTTTTAGAATCAATCTCAGTGGCTTTAGCCCTCTTTTGA
CATGCTCAGCAAATTATGCTCGTTCTTTCACAGATTTTGACATCATTGGC
AAAGACGAATATGGGTAAATATTTACTTTTTCCNTATGNAAATCTGNNNA
TCATCGTACAGNATCCGTGGATGNNATCAATGNATAAATTTGATCTATGT
ACCAAGATATCATACCTAATTTCTGATATCCAACGGGCACATTGGNTTTT
CAAAAAAAAAAAAAA
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